Strain Fitness in Pseudomonas putida KT2440 around PP_1658

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,853,146	+				+0.6
1,853,146	+				+0.7
1,853,179	+				-0.0
1,853,224	+				+0.8
1,853,225	-				-0.2
1,853,225	-				+0.5
1,853,225	-				+0.4
1,853,278	+				-0.4
1,853,279	-				+0.5
1,853,279	-				+1.8
1,853,279	-				+2.0
1,853,279	-				+0.8
1,853,285	+				+0.3
1,853,285	+				-0.7
1,853,285	+				-1.5
1,853,286	-				+0.3
1,853,336	+				+0.3
1,853,356	-				+0.4
1,853,366	+		PP_1657	0.10	+0.8
1,853,366	+		PP_1657	0.10	+0.2
1,853,484	-		PP_1657	0.25	+1.8
1,853,487	-		PP_1657	0.25	+0.6
1,853,487	-		PP_1657	0.25	+0.1
1,853,487	-		PP_1657	0.25	-0.4
1,853,597	+		PP_1657	0.38	-0.0
1,853,598	-		PP_1657	0.38	-0.1
1,853,996	-		PP_1657	0.86	+0.7
1,854,122	+				+0.3
1,854,122	+				+0.4
1,854,123	-				+1.1
1,854,123	-				-0.6
1,854,123	-				+0.6
1,854,123	-				+0.1
1,854,123	-				-0.1
1,854,134	+				-1.0
1,854,135	-				+0.5
1,854,430	+		PP_1658	0.54	-0.6
1,854,430	+		PP_1658	0.54	-1.3
1,854,535	+		PP_1658	0.73	-1.5
1,854,592	-		PP_1658	0.84	-0.7
1,854,592	-		PP_1658	0.84	+0.9
1,854,592	-		PP_1658	0.84	+0.1
1,854,592	-		PP_1658	0.84	-0.7
1,854,640	+				+0.3
1,854,649	+				-0.1
1,854,649	+				-0.5
1,854,649	+				+0.3
1,854,676	+				+0.2
1,854,677	-				-0.7
1,854,677	-				-0.8
1,854,764	+				-0.3
1,854,764	+				+0.5
1,854,764	+				-0.4
1,854,835	-				-0.7
1,854,835	-				-0.3
1,854,902	+				-0.2
1,854,946	+				+0.2
1,854,946	+				-1.5
1,854,969	+				-0.4
1,855,454	+		PP_1659	0.35	+0.1
1,855,454	+		PP_1659	0.35	-0.5
1,855,455	-		PP_1659	0.35	-0.9
1,855,518	-		PP_1659	0.39	-0.2