Strain Fitness in Pseudomonas putida KT2440 around PP_1492

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,695,058	-		PP_1490	0.80	-1.2
1,695,074	-		PP_1490	0.81	+0.2
1,695,107	-		PP_1490	0.84	-1.1
1,695,107	-		PP_1490	0.84	-0.1
1,695,107	-		PP_1490	0.84	+0.1
1,695,110	-		PP_1490	0.84	-0.4
1,695,110	-		PP_1490	0.84	-1.4
1,695,182	-				-0.7
1,695,444	+		PP_1491	0.19	-0.5
1,695,444	+		PP_1491	0.19	+0.6
1,695,444	+		PP_1491	0.19	-0.9
1,695,445	-		PP_1491	0.19	+0.4
1,695,445	-		PP_1491	0.19	-0.0
1,695,673	+		PP_1491	0.54	-1.5
1,695,767	+		PP_1491	0.68	-1.4
1,695,767	+		PP_1491	0.68	-1.8
1,695,767	+		PP_1491	0.68	+0.3
1,695,767	+		PP_1491	0.68	-0.3
1,695,767	+		PP_1491	0.68	-2.2
1,695,768	-		PP_1491	0.69	-1.6
1,695,768	-		PP_1491	0.69	-0.8
1,695,768	-		PP_1491	0.69	-1.1
1,695,768	-		PP_1491	0.69	+0.1
1,695,940	+				-1.3
1,695,940	+				-0.9
1,695,941	-				+0.2
1,696,237	+		PP_1492	0.12	-0.8
1,696,237	+		PP_1492	0.12	-1.0
1,696,237	+		PP_1492	0.12	-1.6
1,696,237	+		PP_1492	0.12	-1.1
1,696,238	-		PP_1492	0.12	-1.7
1,696,238	-		PP_1492	0.12	-0.8
1,696,238	-		PP_1492	0.12	-0.7
1,696,238	-		PP_1492	0.12	-1.3
1,696,277	-		PP_1492	0.13	-0.4
1,696,277	-		PP_1492	0.13	-0.4
1,696,431	+		PP_1492	0.20	-0.6
1,696,432	-		PP_1492	0.20	-1.5
1,696,432	-		PP_1492	0.20	-1.0
1,696,547	-		PP_1492	0.25	+0.1
1,696,601	+		PP_1492	0.28	-1.6
1,696,602	-		PP_1492	0.28	-2.1
1,696,624	-		PP_1492	0.29	-1.3
1,696,646	-		PP_1492	0.30	-0.3
1,696,646	-		PP_1492	0.30	-2.7
1,696,646	-		PP_1492	0.30	+0.2
1,696,823	+		PP_1492	0.37	-3.8
1,696,823	+		PP_1492	0.37	-0.5
1,696,823	+		PP_1492	0.37	-1.7
1,696,823	+		PP_1492	0.37	-0.7
1,696,823	+		PP_1492	0.37	-2.0
1,696,824	-				+2.4
1,696,824	-		PP_1492	0.37	-0.5
1,697,451	-		PP_1492	0.65	+0.1
1,697,470	+		PP_1492	0.66	+0.6
1,697,551	+		PP_1492	0.69	+0.0
1,697,552	-		PP_1492	0.69	-0.6
1,697,651	+		PP_1492	0.74	-0.6
1,697,652	-		PP_1492	0.74	+0.0
1,697,652	-		PP_1492	0.74	-0.3
1,697,652	-		PP_1492	0.74	-0.1
1,697,800	-		PP_1492	0.80	+0.1
1,698,125	+				-1.0
1,698,125	+				-0.2
1,698,125	+				-0.6
1,698,125	+				-0.7
1,698,126	-				+1.9
1,698,126	-				-0.6
1,698,126	-				+0.7
1,698,126	-				-0.1
1,698,127	+				-1.4
1,698,127	+				-0.3
1,698,177	-				-0.4
1,698,177	-				-0.0
1,698,177	-				-0.2
1,698,179	+				+0.5
1,698,179	+				-0.7
1,698,179	+				-1.0
1,698,389	+		PP_1493	0.13	-0.5
1,698,389	+		PP_1493	0.13	+1.4
1,698,501	+		PP_1493	0.24	-0.6
1,698,502	-		PP_1493	0.25	+0.4
1,698,917	+		PP_1493	0.65	-1.1
1,698,917	+		PP_1493	0.65	-1.6
1,698,917	+		PP_1493	0.65	-0.5
1,698,954	-		PP_1493	0.69	+0.1
1,699,042	+		PP_1493	0.78	+0.9
1,699,043	-		PP_1493	0.78	-0.6
1,699,168	+				-1.9