Strain Fitness in Pseudomonas putida KT2440 around PP_1491

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,694,366	-		PP_1490	0.26	-0.3
1,694,366	-		PP_1490	0.26	-0.8
1,694,471	+		PP_1490	0.34	-0.4
1,694,471	+		PP_1490	0.34	-1.3
1,694,471	+		PP_1490	0.34	-2.3
1,694,471	+		PP_1490	0.34	-0.1
1,694,472	-		PP_1490	0.34	-0.1
1,694,472	-		PP_1490	0.34	+0.0
1,694,474	-		PP_1490	0.34	+0.2
1,694,522	-		PP_1490	0.38	-0.3
1,694,632	+		PP_1490	0.47	+0.6
1,694,632	+		PP_1490	0.47	+0.7
1,694,633	-		PP_1490	0.47	-2.4
1,694,633	-		PP_1490	0.47	-0.7
1,694,665	+		PP_1490	0.49	-0.5
1,694,665	+				+0.9
1,694,666	-		PP_1490	0.49	-0.1
1,694,666	-		PP_1490	0.49	-1.2
1,694,676	-		PP_1490	0.50	-1.6
1,694,676	-		PP_1490	0.50	-0.2
1,694,812	+		PP_1490	0.61	-0.3
1,694,813	-		PP_1490	0.61	-0.8
1,694,813	-		PP_1490	0.61	-1.1
1,695,058	-		PP_1490	0.80	-1.2
1,695,074	-		PP_1490	0.81	+0.2
1,695,107	-		PP_1490	0.84	-1.1
1,695,107	-		PP_1490	0.84	-0.1
1,695,107	-		PP_1490	0.84	+0.1
1,695,110	-		PP_1490	0.84	-0.4
1,695,110	-		PP_1490	0.84	-1.4
1,695,182	-				-0.7
1,695,444	+		PP_1491	0.19	-0.5
1,695,444	+		PP_1491	0.19	+0.6
1,695,444	+		PP_1491	0.19	-0.9
1,695,445	-		PP_1491	0.19	+0.4
1,695,445	-		PP_1491	0.19	-0.0
1,695,673	+		PP_1491	0.54	-1.5
1,695,767	+		PP_1491	0.68	-1.4
1,695,767	+		PP_1491	0.68	-1.8
1,695,767	+		PP_1491	0.68	+0.3
1,695,767	+		PP_1491	0.68	-0.3
1,695,767	+		PP_1491	0.68	-2.2
1,695,768	-		PP_1491	0.69	-1.6
1,695,768	-		PP_1491	0.69	-0.8
1,695,768	-		PP_1491	0.69	-1.1
1,695,768	-		PP_1491	0.69	+0.1
1,695,940	+				-1.3
1,695,940	+				-0.9
1,695,941	-				+0.2
1,696,237	+		PP_1492	0.12	-0.8
1,696,237	+		PP_1492	0.12	-1.0
1,696,237	+		PP_1492	0.12	-1.6
1,696,237	+		PP_1492	0.12	-1.1
1,696,238	-		PP_1492	0.12	-1.7
1,696,238	-		PP_1492	0.12	-0.8
1,696,238	-		PP_1492	0.12	-0.7
1,696,238	-		PP_1492	0.12	-1.3
1,696,277	-		PP_1492	0.13	-0.4
1,696,277	-		PP_1492	0.13	-0.4
1,696,431	+		PP_1492	0.20	-0.6
1,696,432	-		PP_1492	0.20	-1.5
1,696,432	-		PP_1492	0.20	-1.0
1,696,547	-		PP_1492	0.25	+0.1
1,696,601	+		PP_1492	0.28	-1.6
1,696,602	-		PP_1492	0.28	-2.1
1,696,624	-		PP_1492	0.29	-1.3
1,696,646	-		PP_1492	0.30	-0.3
1,696,646	-		PP_1492	0.30	-2.7
1,696,646	-		PP_1492	0.30	+0.2
1,696,823	+		PP_1492	0.37	-3.8
1,696,823	+		PP_1492	0.37	-0.5
1,696,823	+		PP_1492	0.37	-1.7
1,696,823	+		PP_1492	0.37	-0.7
1,696,823	+		PP_1492	0.37	-2.0
1,696,824	-				+2.4
1,696,824	-		PP_1492	0.37	-0.5