Strain Fitness in Pseudomonas putida KT2440 around PP_1459

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,663,664	-		PP_1458	0.44	+0.0
1,663,759	+		PP_1458	0.51	-0.4
1,663,759	+		PP_1458	0.51	-0.5
1,663,759	+		PP_1458	0.51	-0.3
1,663,759	+		PP_1458	0.51	-0.2
1,663,760	-		PP_1458	0.51	+0.4
1,663,760	-		PP_1458	0.51	-0.5
1,663,760	-		PP_1458	0.51	-0.6
1,663,767	+		PP_1458	0.52	-0.4
1,663,767	+		PP_1458	0.52	-0.4
1,663,768	-		PP_1458	0.52	+0.2
1,664,050	+		PP_1458	0.74	+0.4
1,664,051	-		PP_1458	0.74	+0.0
1,664,051	-		PP_1458	0.74	+0.1
1,664,083	-		PP_1458	0.76	-1.2
1,664,083	-		PP_1458	0.76	+0.9
1,664,130	-		PP_1458	0.80	-0.3
1,664,130	-		PP_1458	0.80	+0.2
1,664,278	+				+0.9
1,664,279	-				-0.7
1,664,279	-				+0.2
1,664,279	-				-0.3
1,664,285	-				-0.3
1,664,285	-				+0.3
1,664,293	+				+0.1
1,664,293	+				+0.4
1,664,374	+				+1.0
1,664,374	+				-0.4
1,664,375	-				+0.3
1,664,515	-				+0.0
1,664,515	-				-0.3
1,664,657	+				+1.0
1,664,657	+				+1.8
1,664,658	-				+1.0
1,664,659	+				+0.4
1,664,659	+				+0.9
1,664,659	+				+0.4
1,664,659	+				-0.5
1,664,659	+				-0.3
1,664,659	+				+0.4
1,664,659	+				-0.2
1,664,659	+				-1.9
1,664,659	+				-0.5
1,664,659	+				-0.5
1,664,659	+				-0.1
1,664,659	+				-2.0
1,664,660	-				+0.7
1,664,660	-				-0.3
1,664,660	-				-0.4
1,664,660	-				+0.8
1,664,660	-				+0.3
1,664,660	-				-0.4
1,664,660	-				+0.3
1,664,663	+				+0.2
1,664,740	+				+0.4
1,664,889	+		PP_1459	0.19	-1.3
1,664,993	-				-0.6
1,665,090	-		PP_1459	0.35	-0.8
1,665,090	-		PP_1459	0.35	-0.4
1,665,098	+		PP_1459	0.36	-0.2
1,665,098	+		PP_1459	0.36	-1.1
1,665,099	-		PP_1459	0.36	+0.3
1,665,204	-		PP_1459	0.45	-0.6
1,665,204	-		PP_1459	0.45	-1.1
1,665,578	+		PP_1459	0.76	-0.9
1,665,578	+		PP_1459	0.76	-0.1
1,665,851	+				-0.9
1,665,851	+				-1.4
1,665,883	-				+0.2
1,665,892	+				-0.1
1,666,333	+		PP_1460	0.54	-1.8
1,666,418	-		PP_1460	0.63	-0.0
1,666,418	-		PP_1460	0.63	-0.3
1,666,607	+		PP_1460	0.86	+0.9
1,666,607	+		PP_1460	0.86	-0.7
1,666,619	+		PP_1460	0.87	+1.0
1,666,619	+		PP_1460	0.87	+0.3
1,666,633	+		PP_1460	0.89	+2.6
1,666,633	+		PP_1460	0.89	-0.6
1,666,633	+		PP_1460	0.89	+0.4
1,666,633	+		PP_1460	0.89	+1.1
1,666,633	+		PP_1460	0.89	-0.4
1,666,634	-		PP_1460	0.89	-0.2
1,666,634	-		PP_1460	0.89	+0.1
1,666,634	-		PP_1460	0.89	+1.9
1,666,634	-		PP_1460	0.89	-0.7
1,666,635	+		PP_1460	0.89	-0.2
1,666,635	+		PP_1460	0.89	-0.6
1,666,635	+		PP_1460	0.89	-1.0
1,666,635	+		PP_1460	0.89	-1.1
1,666,635	+		PP_1460	0.89	+0.3
1,666,635	+		PP_1460	0.89	+0.4
1,666,636	-		PP_1460	0.89	-1.1
1,666,636	-		PP_1460	0.89	+0.6
1,666,636	-		PP_1460	0.89	+0.1
1,666,636	-		PP_1460	0.89	-0.2
1,666,636	-		PP_1460	0.89	+0.2
1,666,636	-		PP_1460	0.89	+0.9
1,666,636	-		PP_1460	0.89	+0.5
1,666,636	-		PP_1460	0.89	+1.9
1,666,636	-		PP_1460	0.89	-0.0
1,666,636	-		PP_1460	0.89	-0.2
1,666,637	+		PP_1460	0.89	+1.4
1,666,637	+		PP_1460	0.89	-0.6
1,666,637	+		PP_1460	0.89	+0.0
1,666,637	+		PP_1460	0.89	-0.3
1,666,637	+		PP_1460	0.89	+1.4
1,666,637	+		PP_1460	0.89	+0.3
1,666,637	+		PP_1460	0.89	+0.2
1,666,637	+		PP_1460	0.89	+0.1
1,666,637	+		PP_1460	0.89	+0.1
1,666,637	+		PP_1460	0.89	+0.0
1,666,638	-		PP_1460	0.89	+2.4
1,666,638	-		PP_1460	0.89	+0.5
1,666,638	-		PP_1460	0.89	-2.8
1,666,638	-		PP_1460	0.89	-0.1
1,666,638	-		PP_1460	0.89	+0.4
1,666,638	-		PP_1460	0.89	-0.5
1,666,638	-		PP_1460	0.89	-0.0
1,666,638	-				+0.1
1,666,640	-		PP_1460	0.90	-0.2
1,666,640	-		PP_1460	0.90	+0.1
1,666,686	+				-3.0
1,666,686	+				+0.9
1,666,686	+				+0.3
1,666,686	+				+0.8
1,666,686	+				+0.1
1,666,686	+				-0.5
1,666,687	-				+0.1
1,666,687	-				-1.0
1,666,687	-				+0.1
1,666,687	-				+0.1
1,666,687	-				+0.6
1,666,687	-				+1.4
1,666,687	-				+1.0
1,666,687	-				+0.3
1,666,709	-				+0.6
1,666,729	-				+0.2
1,666,729	-				+0.6
1,666,798	+				+0.5