Strain Fitness in Pseudomonas putida KT2440 around PP_1325

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,509,303	-				-0.3
1,509,303	-				+0.6
1,509,303	-				+0.9
1,509,303	-				+0.6
1,509,351	-				+0.2
1,509,351	-				-0.3
1,509,355	-				+0.2
1,509,355	-				+0.1
1,509,355	-				+1.0
1,509,355	-				+0.5
1,509,355	-				+0.2
1,509,355	-				+0.5
1,509,467	-		PP_1324	0.24	-0.2
1,509,543	-		PP_1324	0.44	+0.1
1,509,598	-		PP_1324	0.59	-0.7
1,509,601	-		PP_1324	0.59	+0.2
1,509,601	-		PP_1324	0.59	-0.3
1,509,606	-		PP_1324	0.61	+0.6
1,509,692	-		PP_1324	0.84	+0.6
1,509,915	+				-0.4
1,509,916	-				-1.0
1,509,916	-				-2.0
1,509,936	+		PP_1325	0.10	+0.4
1,509,937	-		PP_1325	0.10	-1.0
1,509,937	-		PP_1325	0.10	-0.5
1,509,937	-		PP_1325	0.10	-0.8
1,509,977	+		PP_1325	0.13	-0.4
1,509,977	+		PP_1325	0.13	-0.7
1,509,978	-		PP_1325	0.13	-1.8
1,509,978	-		PP_1325	0.13	-2.4
1,509,978	-		PP_1325	0.13	-0.1
1,509,978	-		PP_1325	0.13	-0.6
1,509,978	-		PP_1325	0.13	+0.6
1,510,056	+		PP_1325	0.17	-0.6
1,510,083	+		PP_1325	0.18	+0.1
1,510,084	-		PP_1325	0.18	-2.7
1,510,084	-		PP_1325	0.18	+0.4
1,510,101	+		PP_1325	0.19	+0.0
1,510,536	+		PP_1325	0.43	-0.0
1,510,537	-		PP_1325	0.43	-1.3
1,510,650	+		PP_1325	0.50	-0.2
1,510,651	-		PP_1325	0.50	-1.3
1,510,651	-		PP_1325	0.50	-1.6
1,511,160	+		PP_1325	0.78	-0.7
1,511,160	+		PP_1325	0.78	-0.4
1,511,160	+		PP_1325	0.78	-0.4
1,511,160	+		PP_1325	0.78	-1.1
1,511,160	+		PP_1325	0.78	+0.2
1,511,161	-		PP_1325	0.78	-0.3
1,511,161	-		PP_1325	0.78	+0.1
1,511,161	-		PP_1325	0.78	-1.2
1,511,161	-		PP_1325	0.78	-0.8
1,511,367	+		PP_1325	0.89	-0.1
1,511,474	+				-0.2
1,511,474	+				+0.9
1,511,474	+				+0.3
1,511,475	-				-1.9
1,511,568	+				-0.9
1,511,568	+				-0.9
1,511,568	+				-1.7
1,511,568	+				+0.1
1,511,568	+				+0.5
1,511,568	+				-1.4
1,511,569	-				+0.6
1,511,569	-				-0.1
1,511,569	-				-0.9
1,511,580	+				+1.4
1,511,580	+				-0.7
1,511,606	+				+1.2
1,511,606	+				+0.9
1,511,607	-				+0.9
1,511,607	-				+0.2
1,511,653	+				+0.2
1,511,654	-				+0.5
1,511,655	+				-0.0
1,511,655	+				-0.9
1,511,655	+				-0.1
1,511,655	+				-0.2
1,511,655	+				+0.1
1,511,655	+				+1.1
1,511,655	+				-0.5
1,511,655	+				-0.7
1,511,655	+				-0.6
1,511,656	-				-0.1
1,511,656	-				+0.2
1,511,656	-				-0.1
1,511,656	-				+0.6
1,511,656	-				+0.5
1,511,656	-				+0.2
1,511,656	-				+0.3
1,511,656	-				-0.3
1,511,715	+				+0.3
1,511,798	+				+0.4
1,511,798	+				-0.6
1,511,798	+				+0.8
1,511,798	+				-0.1
1,511,798	+				-0.9
1,511,799	-				+0.4
1,511,799	-				+0.6
1,511,799	-				-1.1
1,511,799	-				+0.1
1,511,799	-				-0.1
1,511,799	-				-0.7
1,512,261	-		PP_1326	0.58	-1.0
1,512,310	-		PP_1326	0.64	+0.2
1,512,519	+		PP_1326	0.88	-0.1
1,512,519	+		PP_1326	0.88	-0.7