Strain Fitness in Pseudomonas putida KT2440 around PP_1157

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,330,593	+				+1.3
1,330,594	-				+0.1
1,330,618	+				+1.5
1,330,618	+				-1.0
1,330,618	+				+0.6
1,330,619	-				-1.0
1,330,641	-				+0.6
1,330,641	-				+1.2
1,330,641	-				-0.3
1,330,765	+				+1.0
1,330,766	-				-0.9
1,332,360	+				+0.3
1,332,417	+				+0.3
1,332,433	+				-0.0
1,332,442	-				+0.6
1,332,459	+				+1.0
1,332,459	+				+0.3
1,332,460	-				-0.0
1,332,460	-				-0.8
1,332,474	+				-0.4
1,332,474	+				+0.5
1,332,475	-				-0.1
1,332,491	+				+0.6
1,332,491	+				-0.1
1,332,491	+				-1.4
1,332,491	+				+2.5
1,332,491	+				-1.0
1,332,491	+				-0.5
1,332,492	-				+0.4
1,332,492	-				+0.8
1,332,492	-				-0.1
1,332,492	-				-0.4
1,332,492	-				+0.2
1,332,492	-				+2.6
1,332,492	-				-0.0
1,332,492	-				-0.1
1,332,492	-				-0.3
1,332,495	+				+0.5
1,332,495	+				+1.5
1,332,495	+				-0.1
1,332,495	+				-0.1
1,332,495	+				-0.8
1,332,495	+				+0.0
1,332,495	+				+0.8
1,332,495	+				-1.1
1,332,496	-				-0.3
1,332,496	-				+0.7
1,332,496	-				-0.3
1,332,496	-				+1.1
1,332,496	-				+0.0
1,332,496	-				+0.4
1,332,496	-				-0.7
1,332,496	-				-0.5
1,332,496	-				-0.2
1,332,496	-				+0.8
1,332,496	-				+1.7
1,332,496	-				+0.0
1,332,496	-				+0.0
1,332,541	+				+0.1
1,332,542	-				-0.2
1,332,542	-				-0.6
1,332,568	+				+0.7
1,332,568	+				+0.2
1,332,629	+				+1.5
1,332,630	-				+0.2
1,332,687	+				-1.7
1,332,687	+				+0.1
1,332,804	+				+0.9
1,332,804	+				+0.2
1,332,805	-				-0.1
1,332,805	-				+0.8
1,332,820	+				+0.9
1,332,917	+				-0.5
1,332,918	-				-0.2
1,332,918	-				+1.7
1,332,943	+				-0.3
1,332,944	-				+0.4
1,332,970	+				-0.7
1,332,970	+				-0.0
1,332,970	+				+0.9
1,332,970	+				-1.3
1,333,036	+				+0.7
1,333,036	+				+0.2
1,333,036	+				-1.0
1,333,037	-				+0.2
1,333,037	-				-0.7
1,333,043	+				+0.2
1,333,043	+				-0.7
1,333,044	-				-0.5
1,333,044	-				+0.3
1,333,044	-				+0.6
1,333,044	-				-0.5
1,333,262	-				+0.6
1,333,318	+				-0.0
1,333,369	-				+0.5
1,333,404	+				+1.0
1,333,404	+				-1.3
1,333,404	+				+0.6
1,333,404	+				-1.0
1,333,405	-				+1.3