Strain Fitness in Pseudomonas putida KT2440 around PP_0872

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,010,657	-		PP_0871	0.45	+0.3
1,010,657	-		PP_0871	0.45	-0.2
1,010,733	-		PP_0871	0.56	+0.8
1,010,733	-		PP_0871	0.56	-0.1
1,010,733	-		PP_0871	0.56	+0.2
1,010,832	+		PP_0871	0.69	-1.0
1,010,892	+		PP_0871	0.77	+0.2
1,010,911	+		PP_0871	0.80	-0.0
1,010,911	+		PP_0871	0.80	+0.5
1,010,911	+		PP_0871	0.80	+0.1
1,010,911	+		PP_0871	0.80	+0.8
1,010,912	-		PP_0871	0.80	+0.3
1,011,049	+				-0.1
1,011,237	+				-0.7
1,011,238	-				+0.3
1,011,428	+				+0.1
1,011,429	-				+0.2
1,011,462	+				-0.4
1,011,463	-				-0.8
1,011,546	+				+0.6
1,011,551	+				-0.4
1,011,551	+				-0.8
1,011,551	+				-0.8
1,011,551	+				+0.3
1,011,657	+				-2.6
1,011,880	+		PP_0872	0.18	-0.2
1,011,881	-		PP_0872	0.18	-1.4
1,011,930	+		PP_0872	0.22	+0.8
1,011,938	+		PP_0872	0.22	-0.4
1,012,109	-		PP_0872	0.33	-0.5
1,012,129	+		PP_0872	0.34	+0.1
1,012,129	+		PP_0872	0.34	+0.6
1,012,130	-		PP_0872	0.34	-1.7
1,012,130	-		PP_0872	0.34	-0.6
1,012,148	-		PP_0872	0.35	-1.8
1,012,148	-		PP_0872	0.35	-2.1
1,012,148	-		PP_0872	0.35	-1.0
1,012,148	-		PP_0872	0.35	-0.8
1,012,159	+		PP_0872	0.36	-2.2
1,012,159	+		PP_0872	0.36	-1.8
1,012,159	+		PP_0872	0.36	-1.0
1,012,160	-		PP_0872	0.36	+0.6
1,012,250	-		PP_0872	0.42	-1.2
1,012,250	-		PP_0872	0.42	-2.3
1,012,553	-		PP_0872	0.61	-1.7
1,012,553	-		PP_0872	0.61	-1.9
1,012,781	+		PP_0872	0.75	-0.4
1,012,851	+		PP_0872	0.80	-2.2
1,012,852	-		PP_0872	0.80	-0.9
1,012,948	+		PP_0872	0.86	+0.8
1,012,948	+		PP_0872	0.86	+0.4
1,012,948	+		PP_0872	0.86	-1.4
1,012,949	-		PP_0872	0.86	-1.0
1,012,949	-		PP_0872	0.86	+1.9
1,012,949	-		PP_0872	0.86	-0.3
1,012,974	+		PP_0872	0.87	+0.0
1,012,974	+		PP_0872	0.87	-1.0
1,012,975	-		PP_0872	0.88	-0.4
1,013,086	+				-2.3
1,013,086	+				-1.4
1,013,171	-				-0.0
1,013,254	+				-0.7
1,013,255	-				+1.4
1,013,255	-				-0.2
1,013,290	-				+0.1
1,013,320	+				+0.4
1,013,320	+				-0.5
1,013,320	+				+0.2
1,013,321	-				+0.2
1,013,344	+				+0.5
1,013,344	+				+0.2
1,013,379	+				-0.2
1,013,379	+				+0.5
1,013,380	-				+0.1
1,013,380	-				+0.2
1,013,410	-				+0.7
1,013,419	+		PP_0873	0.11	+0.7
1,013,420	-		PP_0873	0.11	-0.5
1,013,420	-		PP_0873	0.11	-0.2
1,013,422	+		PP_0873	0.11	-0.3
1,013,423	-		PP_0873	0.11	+0.3
1,013,523	+		PP_0873	0.20	+0.1
1,013,523	+		PP_0873	0.20	-0.2
1,013,524	-		PP_0873	0.20	-0.2
1,013,532	+		PP_0873	0.21	+0.4
1,013,532	+		PP_0873	0.21	+0.0
1,013,532	+		PP_0873	0.21	-0.5
1,013,533	-		PP_0873	0.21	-0.2
1,013,533	-		PP_0873	0.21	+0.2
1,013,533	-				-0.7
1,013,533	-		PP_0873	0.21	-0.2
1,013,533	-		PP_0873	0.21	-1.3
1,013,533	-		PP_0873	0.21	-1.0
1,013,538	+		PP_0873	0.22	-1.5
1,013,619	+		PP_0873	0.29	-0.4
1,013,694	-		PP_0873	0.36	+0.1
1,013,694	-		PP_0873	0.36	-1.7
1,013,704	+		PP_0873	0.37	-0.8
1,013,748	+		PP_0873	0.41	+0.4
1,013,749	-		PP_0873	0.41	+0.6
1,013,749	-		PP_0873	0.41	-0.0
1,013,757	+		PP_0873	0.42	-0.3
1,013,757	+		PP_0873	0.42	+0.0
1,013,757	+		PP_0873	0.42	+0.8
1,013,758	-		PP_0873	0.42	+0.3
1,013,758	-		PP_0873	0.42	-0.1
1,013,835	+		PP_0873	0.49	-0.0
1,013,836	-		PP_0873	0.49	+0.2
1,013,988	+		PP_0873	0.63	+0.6
1,013,988	+		PP_0873	0.63	-0.2
1,013,988	+		PP_0873	0.63	-0.0
1,014,016	-		PP_0873	0.66	+0.7
1,014,027	+		PP_0873	0.67	-0.3
1,014,027	+				+0.6