Strain Fitness in Pseudomonas putida KT2440 around PP_0703

Experiment: Cholinium lysinate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0702 and PP_0703 are separated by 7 nucleotidesPP_0703 and PP_0704 overlap by 8 nucleotidesPP_0704 and PP_0705 are separated by 171 nucleotides PP_0702: PP_0702 - Major facilitator family transporter, at 816,052 to 817,209 _0702 PP_0703: PP_0703 - putative Transmembrane sensor, at 817,217 to 818,167 _0703 PP_0704: PP_0704 - RNA polymerase sigma-70 factor, ECF subfamily, at 818,160 to 818,675 _0704 PP_0705: PP_0705 - DNA-3-methyladenine glycosylase, at 818,847 to 819,473 _0705 Position (kb) 817 818 819Strain fitness (log2 ratio) -2 -1 0 1 2at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.451 kb on + strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.724 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strandat 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 817.210 kb on + strandat 817.218 kb on + strandat 817.219 kb on - strandat 817.219 kb on - strandat 817.242 kb on + strandat 817.242 kb on + strandat 817.243 kb on - strandat 817.243 kb on - strandat 817.255 kb on - strandat 817.320 kb on + strand, within PP_0703at 817.434 kb on - strand, within PP_0703at 817.740 kb on + strand, within PP_0703at 817.740 kb on + strand, within PP_0703at 817.740 kb on + strand, within PP_0703at 818.011 kb on + strand, within PP_0703at 818.156 kb on - strandat 818.173 kb on + strandat 818.174 kb on - strandat 818.351 kb on + strand, within PP_0704at 818.369 kb on + strand, within PP_0704at 818.369 kb on + strand, within PP_0704at 818.370 kb on - strand, within PP_0704at 818.370 kb on - strand, within PP_0704at 818.370 kb on - strand, within PP_0704at 818.488 kb on + strand, within PP_0704at 818.488 kb on + strand, within PP_0704at 818.489 kb on - strand, within PP_0704at 818.546 kb on + strand, within PP_0704at 818.615 kb on + strand, within PP_0704at 818.616 kb on - strand, within PP_0704at 818.616 kb on - strand, within PP_0704at 818.630 kb on - strandat 818.678 kb on + strandat 818.679 kb on - strandat 818.742 kb on + strandat 818.743 kb on - strandat 818.743 kb on - strandat 818.770 kb on + strandat 818.770 kb on + strandat 818.771 kb on - strandat 818.812 kb on + strandat 818.878 kb on - strandat 818.930 kb on + strand, within PP_0705at 818.964 kb on - strand, within PP_0705at 818.982 kb on + strand, within PP_0705at 818.982 kb on + strand, within PP_0705at 818.982 kb on + strand, within PP_0705at 818.983 kb on - strand, within PP_0705at 818.983 kb on - strand, within PP_0705at 818.983 kb on - strand, within PP_0705

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol%
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816,265 + PP_0702 0.18 -0.6
816,265 + PP_0702 0.18 -0.8
816,265 + PP_0702 0.18 +0.0
816,265 + PP_0702 0.18 +1.1
816,265 + PP_0702 0.18 +0.5
816,266 - PP_0702 0.18 +0.8
816,266 - PP_0702 0.18 +0.1
816,266 - PP_0702 0.18 -0.5
816,266 - PP_0702 0.18 +0.0
816,266 - PP_0702 0.18 -1.2
816,266 - PP_0702 0.18 -0.1
816,266 - PP_0702 0.18 +0.1
816,451 + PP_0702 0.34 -0.8
816,452 - PP_0702 0.35 -1.6
816,452 - PP_0702 0.35 +0.1
816,452 - PP_0702 0.35 +0.5
816,724 + PP_0702 0.58 +0.6
816,967 + PP_0702 0.79 +0.1
816,967 + PP_0702 0.79 -0.5
816,967 + PP_0702 0.79 +0.2
816,967 + PP_0702 0.79 -0.1
816,967 + PP_0702 0.79 -1.3
816,967 + PP_0702 0.79 +0.8
816,967 + PP_0702 0.79 -1.8
816,967 + PP_0702 0.79 -0.6
816,967 + PP_0702 0.79 -1.4
816,967 + PP_0702 0.79 -0.0
816,968 - PP_0702 0.79 +0.3
816,968 - PP_0702 0.79 +0.1
816,968 - PP_0702 0.79 -0.6
816,968 - PP_0702 0.79 -0.0
816,968 - PP_0702 0.79 +0.2
816,968 - PP_0702 0.79 -0.4
816,968 - +0.7
816,968 - PP_0702 0.79 +0.1
816,968 - PP_0702 0.79 +0.7
816,969 + PP_0702 0.79 +0.2
816,969 + PP_0702 0.79 -0.4
816,969 + PP_0702 0.79 -1.9
816,969 + PP_0702 0.79 +0.6
816,969 + PP_0702 0.79 +0.5
816,970 - PP_0702 0.79 -0.3
816,970 - PP_0702 0.79 -0.9
816,970 - PP_0702 0.79 -0.2
816,970 - PP_0702 0.79 -0.3
817,210 + -0.1
817,218 + -0.4
817,219 - +0.0
817,219 - -0.1
817,242 + +0.6
817,242 + +1.0
817,243 - +1.7
817,243 - +0.3
817,255 - -1.1
817,320 + PP_0703 0.11 -0.7
817,434 - PP_0703 0.23 -2.1
817,740 + PP_0703 0.55 -0.3
817,740 + PP_0703 0.55 -1.3
817,740 + PP_0703 0.55 -0.0
818,011 + PP_0703 0.83 -1.0
818,156 - -0.7
818,173 + -0.4
818,174 - +0.5
818,351 + PP_0704 0.37 -0.2
818,369 + PP_0704 0.41 -0.5
818,369 + PP_0704 0.41 -0.1
818,370 - PP_0704 0.41 -0.8
818,370 - PP_0704 0.41 -0.9
818,370 - PP_0704 0.41 +0.3
818,488 + PP_0704 0.64 -1.6
818,488 + PP_0704 0.64 -0.3
818,489 - PP_0704 0.64 +0.7
818,546 + PP_0704 0.75 +0.3
818,615 + PP_0704 0.88 +2.0
818,616 - PP_0704 0.88 +0.6
818,616 - PP_0704 0.88 -0.3
818,630 - +0.1
818,678 + -0.0
818,679 - -0.3
818,742 + +1.2
818,743 - +0.0
818,743 - -0.5
818,770 + -0.0
818,770 + +0.5
818,771 - -1.3
818,812 + -0.3
818,878 - +0.2
818,930 + PP_0705 0.13 -1.6
818,964 - PP_0705 0.19 +0.3
818,982 + PP_0705 0.22 -1.4
818,982 + PP_0705 0.22 +0.5
818,982 + PP_0705 0.22 +1.0
818,983 - PP_0705 0.22 -0.3
818,983 - PP_0705 0.22 -0.5
818,983 - PP_0705 0.22 -0.3

Or see this region's nucleotide sequence