Strain Fitness in Pseudomonas putida KT2440 around PP_0414

Experiment: Cholinium lysinate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0413 and PP_0414 are separated by 10 nucleotidesPP_0414 and PP_0415 are separated by 150 nucleotidesPP_0415 and PP_0416 overlap by 4 nucleotides PP_0413: PP_0413 - Polyamine ABC transporter, permease protein, at 501,712 to 502,959 _0413 PP_0414: PP_0414 - Polyamine ABC transporter, permease protein, at 502,970 to 503,797 _0414 PP_0415: PP_0415 - ribulose-5-phosphate 3-epimerase, at 503,948 to 504,622 _0415 PP_0416: PP_0416 - Phosphoglycolate phosphatase, at 504,619 to 505,437 _0416 Position (kb) 502 503 504Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 501.970 kb on + strand, within PP_0413at 501.970 kb on + strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.122 kb on + strand, within PP_0413at 502.122 kb on + strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.168 kb on + strand, within PP_0413at 502.192 kb on - strand, within PP_0413at 502.214 kb on - strand, within PP_0413at 502.214 kb on - strand, within PP_0413at 502.260 kb on - strand, within PP_0413at 502.288 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.357 kb on + strand, within PP_0413at 502.369 kb on + strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.452 kb on - strand, within PP_0413at 502.567 kb on + strand, within PP_0413at 502.568 kb on - strand, within PP_0413at 502.568 kb on - strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.632 kb on + strand, within PP_0413at 502.633 kb on - strand, within PP_0413at 502.645 kb on + strand, within PP_0413at 502.703 kb on - strand, within PP_0413at 502.717 kb on + strand, within PP_0413at 502.718 kb on - strand, within PP_0413at 502.768 kb on + strand, within PP_0413at 502.769 kb on - strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.819 kb on + strand, within PP_0413at 502.820 kb on - strand, within PP_0413at 502.834 kb on + strand, within PP_0413at 502.835 kb on - strandat 502.835 kb on - strandat 502.909 kb on + strandat 502.910 kb on - strandat 502.918 kb on + strandat 502.918 kb on + strandat 502.918 kb on + strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.920 kb on + strandat 502.920 kb on + strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 503.012 kb on + strandat 503.012 kb on + strandat 503.012 kb on + strandat 503.024 kb on - strandat 503.142 kb on - strand, within PP_0414at 503.349 kb on - strand, within PP_0414at 503.349 kb on - strand, within PP_0414at 503.437 kb on + strand, within PP_0414at 503.437 kb on + strand, within PP_0414at 503.438 kb on - strand, within PP_0414at 503.468 kb on + strand, within PP_0414at 503.878 kb on + strandat 503.879 kb on - strandat 503.909 kb on + strandat 503.957 kb on + strandat 503.957 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol%
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501,970 + PP_0413 0.21 -0.8
501,970 + PP_0413 0.21 -0.8
501,971 - PP_0413 0.21 -0.5
501,971 - PP_0413 0.21 +0.4
501,971 - PP_0413 0.21 +0.6
501,971 - PP_0413 0.21 -0.4
502,120 + PP_0413 0.33 +0.5
502,120 + PP_0413 0.33 -0.6
502,120 + PP_0413 0.33 -0.5
502,121 - PP_0413 0.33 +0.0
502,121 - PP_0413 0.33 -0.0
502,121 - PP_0413 0.33 +1.3
502,122 + PP_0413 0.33 -0.5
502,122 + PP_0413 0.33 -0.8
502,123 - PP_0413 0.33 +0.4
502,123 - PP_0413 0.33 -1.1
502,123 - PP_0413 0.33 +0.3
502,168 + PP_0413 0.37 -1.0
502,192 - PP_0413 0.38 +0.3
502,214 - PP_0413 0.40 +0.4
502,214 - PP_0413 0.40 +0.6
502,260 - PP_0413 0.44 +0.0
502,288 + PP_0413 0.46 -0.0
502,338 + PP_0413 0.50 -0.8
502,338 + PP_0413 0.50 +0.1
502,338 + PP_0413 0.50 -0.3
502,339 - PP_0413 0.50 +0.2
502,339 - PP_0413 0.50 +1.6
502,339 - PP_0413 0.50 -0.2
502,357 + PP_0413 0.52 -1.0
502,369 + PP_0413 0.53 +0.5
502,370 - PP_0413 0.53 -0.9
502,370 - PP_0413 0.53 +0.3
502,370 - PP_0413 0.53 -0.3
502,370 - PP_0413 0.53 -0.3
502,452 - PP_0413 0.59 -0.4
502,567 + PP_0413 0.69 +0.8
502,568 - PP_0413 0.69 +0.6
502,568 - PP_0413 0.69 -0.3
502,615 + PP_0413 0.72 -0.6
502,615 + PP_0413 0.72 -1.2
502,615 + PP_0413 0.72 -0.2
502,632 + PP_0413 0.74 -0.3
502,633 - PP_0413 0.74 +1.0
502,645 + PP_0413 0.75 -1.2
502,703 - PP_0413 0.79 -0.4
502,717 + PP_0413 0.81 +0.2
502,718 - PP_0413 0.81 -0.6
502,768 + PP_0413 0.85 +0.1
502,769 - PP_0413 0.85 +0.2
502,771 + PP_0413 0.85 -0.1
502,771 + PP_0413 0.85 -1.6
502,771 + PP_0413 0.85 +1.3
502,771 + PP_0413 0.85 -0.0
502,771 + PP_0413 0.85 +0.6
502,772 - PP_0413 0.85 -0.4
502,772 - PP_0413 0.85 -0.1
502,772 - PP_0413 0.85 -0.1
502,772 - PP_0413 0.85 +1.1
502,772 - PP_0413 0.85 +0.9
502,819 + PP_0413 0.89 -0.3
502,820 - PP_0413 0.89 -0.0
502,834 + PP_0413 0.90 -0.8
502,835 - -0.6
502,835 - -0.9
502,909 + -2.1
502,910 - +0.2
502,918 + -0.4
502,918 + +1.3
502,918 + -1.0
502,919 - -0.4
502,919 - +0.1
502,919 - +2.7
502,919 - +0.6
502,919 - -0.8
502,919 - -0.0
502,919 - +1.1
502,919 - -0.7
502,920 + +0.4
502,920 + +0.0
502,921 - -0.4
502,921 - +0.4
502,921 - +0.7
502,921 - -0.9
502,921 - +0.7
502,982 + +0.7
502,982 + +1.4
502,982 + +0.2
502,982 + +0.6
502,982 + -0.5
502,983 - -0.1
502,983 - -0.9
502,983 - +0.0
502,983 - +0.1
502,983 - -0.1
502,983 - -0.3
502,983 - -0.7
502,983 - +0.2
503,012 + -0.4
503,012 + +1.0
503,012 + +0.6
503,024 - +0.2
503,142 - PP_0414 0.21 -0.3
503,349 - PP_0414 0.46 -0.6
503,349 - PP_0414 0.46 -0.7
503,437 + PP_0414 0.56 -3.0
503,437 + PP_0414 0.56 -2.0
503,438 - PP_0414 0.57 -0.5
503,468 + PP_0414 0.60 -0.0
503,878 + -0.0
503,879 - -0.0
503,909 + +0.4
503,957 + +0.2
503,957 + -0.4

Or see this region's nucleotide sequence