Strain Fitness in Pseudomonas putida KT2440 around PP_0328

Experiment: Cholinium lysinate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0327 and PP_0328 are separated by 301 nucleotidesPP_0328 and PP_0329 are separated by 203 nucleotides PP_0327: PP_0327 - formyltetrahydrofolate deformylase, at 393,460 to 394,317 _0327 PP_0328: PP_0328 - formaldehyde dehydrogenase, at 394,619 to 395,818 _0328 PP_0329: PP_0329 - conserved protein of unknown function, at 396,022 to 396,945 _0329 Position (kb) 394 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1at 393.781 kb on + strand, within PP_0327at 393.877 kb on + strand, within PP_0327at 393.878 kb on - strand, within PP_0327at 393.880 kb on + strand, within PP_0327at 393.881 kb on - strand, within PP_0327at 393.979 kb on + strand, within PP_0327at 393.979 kb on + strand, within PP_0327at 393.980 kb on - strand, within PP_0327at 393.980 kb on - strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.989 kb on + strand, within PP_0327at 393.989 kb on + strand, within PP_0327at 394.036 kb on - strand, within PP_0327at 394.036 kb on - strand, within PP_0327at 394.079 kb on - strand, within PP_0327at 394.090 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.316 kb on - strandat 394.316 kb on - strandat 394.355 kb on + strandat 394.355 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.396 kb on - strandat 394.450 kb on + strandat 394.451 kb on - strandat 394.451 kb on - strandat 394.476 kb on - strandat 394.508 kb on + strandat 394.592 kb on + strandat 394.592 kb on + strandat 394.612 kb on + strandat 394.612 kb on + strandat 394.613 kb on - strandat 394.643 kb on + strandat 394.669 kb on - strandat 394.683 kb on - strandat 394.792 kb on + strand, within PP_0328at 394.792 kb on + strand, within PP_0328at 394.792 kb on + strand, within PP_0328at 394.793 kb on - strand, within PP_0328at 394.793 kb on - strand, within PP_0328at 394.988 kb on + strand, within PP_0328at 394.988 kb on + strand, within PP_0328at 394.988 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.034 kb on - strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.190 kb on - strand, within PP_0328at 395.190 kb on - strand, within PP_0328at 395.259 kb on + strand, within PP_0328at 395.260 kb on - strand, within PP_0328at 395.260 kb on - strand, within PP_0328at 395.525 kb on + strand, within PP_0328at 395.525 kb on + strand, within PP_0328at 395.525 kb on + strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strandat 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.526 kb on - strand, within PP_0328at 395.648 kb on + strand, within PP_0328at 395.747 kb on + strandat 395.748 kb on - strandat 395.748 kb on - strandat 395.748 kb on - strandat 395.817 kb on - strandat 395.869 kb on - strandat 395.903 kb on - strandat 395.943 kb on + strandat 395.943 kb on + strandat 395.943 kb on + strandat 395.943 kb on + strandat 395.944 kb on - strandat 395.944 kb on - strandat 395.944 kb on - strandat 395.944 kb on - strandat 396.077 kb on + strandat 396.078 kb on - strandat 396.078 kb on - strandat 396.120 kb on - strand, within PP_0329at 396.120 kb on - strand, within PP_0329at 396.120 kb on - strand, within PP_0329at 396.162 kb on - strand, within PP_0329at 396.242 kb on - strand, within PP_0329at 396.246 kb on - strand, within PP_0329at 396.246 kb on - strand, within PP_0329at 396.448 kb on - strand, within PP_0329at 396.465 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.636 kb on - strand, within PP_0329at 396.636 kb on - strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.644 kb on - strand, within PP_0329at 396.656 kb on - strand, within PP_0329at 396.710 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.726 kb on - strand, within PP_0329

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol%
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393,781 + PP_0327 0.37 +1.2
393,877 + PP_0327 0.49 -1.6
393,878 - PP_0327 0.49 -2.2
393,880 + PP_0327 0.49 +0.2
393,881 - PP_0327 0.49 -0.3
393,979 + PP_0327 0.60 +1.4
393,979 + PP_0327 0.60 +0.5
393,980 - PP_0327 0.61 -1.0
393,980 - PP_0327 0.61 +0.3
393,981 + PP_0327 0.61 -0.8
393,981 + PP_0327 0.61 -0.1
393,981 + PP_0327 0.61 -0.4
393,982 - PP_0327 0.61 -0.6
393,982 - PP_0327 0.61 +0.1
393,982 - PP_0327 0.61 +0.3
393,989 + PP_0327 0.62 -0.4
393,989 + PP_0327 0.62 +0.2
394,036 - PP_0327 0.67 +0.6
394,036 - PP_0327 0.67 +0.4
394,079 - PP_0327 0.72 +0.1
394,090 + PP_0327 0.73 -0.6
394,129 + PP_0327 0.78 -0.1
394,129 + PP_0327 0.78 +0.9
394,129 + PP_0327 0.78 -0.2
394,129 + PP_0327 0.78 +1.0
394,129 + PP_0327 0.78 -1.7
394,129 + PP_0327 0.78 +0.1
394,129 + PP_0327 0.78 -0.6
394,129 + PP_0327 0.78 +0.3
394,130 - PP_0327 0.78 +0.1
394,130 - PP_0327 0.78 -0.4
394,130 - PP_0327 0.78 -0.2
394,316 - +0.8
394,316 - +0.7
394,355 + +0.0
394,355 + -0.8
394,361 + +1.2
394,361 + +0.1
394,361 + +0.1
394,361 + +0.2
394,396 - +1.1
394,450 + +0.3
394,451 - -1.0
394,451 - +0.3
394,476 - -0.2
394,508 + +0.6
394,592 + -0.4
394,592 + +0.2
394,612 + -0.8
394,612 + +0.3
394,613 - +0.5
394,643 + +0.4
394,669 - +0.4
394,683 - +0.8
394,792 + PP_0328 0.14 +1.4
394,792 + PP_0328 0.14 +0.1
394,792 + PP_0328 0.14 -0.0
394,793 - PP_0328 0.14 -0.8
394,793 - PP_0328 0.14 -0.9
394,988 + PP_0328 0.31 +0.4
394,988 + PP_0328 0.31 -0.3
394,988 + PP_0328 0.31 -0.7
395,033 + PP_0328 0.34 +0.1
395,033 + PP_0328 0.34 +0.0
395,033 + PP_0328 0.34 -0.4
395,034 - PP_0328 0.35 +0.6
395,189 + PP_0328 0.47 -0.1
395,189 + PP_0328 0.47 +0.2
395,189 + PP_0328 0.47 +1.3
395,189 + PP_0328 0.47 -0.3
395,189 + PP_0328 0.47 -1.2
395,190 - PP_0328 0.48 +0.3
395,190 - PP_0328 0.48 +0.8
395,259 + PP_0328 0.53 -0.2
395,260 - PP_0328 0.53 +0.0
395,260 - PP_0328 0.53 +0.9
395,525 + PP_0328 0.76 +0.4
395,525 + PP_0328 0.76 +0.3
395,525 + PP_0328 0.76 -0.5
395,526 - PP_0328 0.76 -0.8
395,526 - PP_0328 0.76 -0.5
395,526 - +0.2
395,526 - PP_0328 0.76 +0.7
395,526 - PP_0328 0.76 +0.3
395,526 - PP_0328 0.76 +0.2
395,526 - PP_0328 0.76 -0.3
395,526 - PP_0328 0.76 +0.6
395,648 + PP_0328 0.86 +0.6
395,747 + -0.3
395,748 - +0.1
395,748 - -1.3
395,748 - +1.0
395,817 - -0.7
395,869 - -0.0
395,903 - -2.9
395,943 + +0.3
395,943 + -0.4
395,943 + -0.3
395,943 + -0.7
395,944 - +0.3
395,944 - -0.9
395,944 - -0.2
395,944 - -0.2
396,077 + +1.3
396,078 - -0.3
396,078 - +0.6
396,120 - PP_0329 0.11 -0.3
396,120 - PP_0329 0.11 +0.2
396,120 - PP_0329 0.11 -0.6
396,162 - PP_0329 0.15 -1.0
396,242 - PP_0329 0.24 -0.5
396,246 - PP_0329 0.24 +0.2
396,246 - PP_0329 0.24 +0.9
396,448 - PP_0329 0.46 +0.8
396,465 + PP_0329 0.48 +0.5
396,635 + PP_0329 0.66 +1.3
396,635 + PP_0329 0.66 -0.2
396,635 + PP_0329 0.66 +0.5
396,636 - PP_0329 0.66 +1.2
396,636 - PP_0329 0.66 -1.0
396,643 + PP_0329 0.67 +0.1
396,643 + PP_0329 0.67 -0.8
396,643 + PP_0329 0.67 -1.6
396,643 + PP_0329 0.67 +0.7
396,643 + PP_0329 0.67 +0.5
396,644 - PP_0329 0.67 -1.3
396,656 - PP_0329 0.69 +0.4
396,710 + PP_0329 0.74 -0.0
396,725 + PP_0329 0.76 +0.7
396,725 + PP_0329 0.76 -0.7
396,725 + PP_0329 0.76 -0.3
396,726 - PP_0329 0.76 -0.2

Or see this region's nucleotide sequence