Strain Fitness in Pseudomonas putida KT2440 around PP_0273

Experiment: Cholinium lysinate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0272 and PP_0273 are separated by 65 nucleotidesPP_0273 and PP_5435 are separated by 175 nucleotidesPP_5435 and PP_0274 are separated by 41 nucleotides PP_0272: PP_0272 - Outer membrane ferric siderophore receptor, at 330,111 to 332,408 _0272 PP_0273: PP_0273 - conserved protein of unknown function, at 332,474 to 332,686 _0273 PP_5435: PP_5435 - conserved protein of unknown function, at 332,862 to 333,215 _5435 PP_0274: PP_0274 - putative transcriptional regulator containing HTH domain, at 333,257 to 333,730 _0274 Position (kb) 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.479 kb on + strand, within PP_0272at 331.480 kb on - strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.543 kb on - strand, within PP_0272at 331.543 kb on - strand, within PP_0272at 331.608 kb on + strand, within PP_0272at 331.609 kb on - strand, within PP_0272at 331.678 kb on - strand, within PP_0272at 331.692 kb on + strand, within PP_0272at 331.692 kb on + strand, within PP_0272at 331.692 kb on + strand, within PP_0272at 331.693 kb on - strand, within PP_0272at 331.693 kb on - strand, within PP_0272at 331.710 kb on + strand, within PP_0272at 331.710 kb on + strand, within PP_0272at 331.710 kb on + strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.719 kb on + strand, within PP_0272at 331.720 kb on - strand, within PP_0272at 331.720 kb on - strand, within PP_0272at 331.728 kb on + strand, within PP_0272at 331.728 kb on + strand, within PP_0272at 331.728 kb on + strand, within PP_0272at 331.729 kb on - strand, within PP_0272at 331.729 kb on - strand, within PP_0272at 331.736 kb on + strand, within PP_0272at 331.803 kb on + strand, within PP_0272at 331.804 kb on - strand, within PP_0272at 331.814 kb on + strand, within PP_0272at 331.814 kb on + strand, within PP_0272at 331.815 kb on - strand, within PP_0272at 331.860 kb on + strand, within PP_0272at 331.860 kb on + strand, within PP_0272at 331.932 kb on + strand, within PP_0272at 331.933 kb on - strand, within PP_0272at 331.964 kb on + strand, within PP_0272at 332.026 kb on - strand, within PP_0272at 332.026 kb on - strand, within PP_0272at 332.026 kb on - strand, within PP_0272at 332.097 kb on + strand, within PP_0272at 332.192 kb on + strandat 332.192 kb on + strandat 332.192 kb on + strandat 332.193 kb on - strandat 332.196 kb on - strandat 332.265 kb on + strandat 332.265 kb on + strandat 332.266 kb on - strandat 332.325 kb on + strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.328 kb on + strandat 332.328 kb on + strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.346 kb on + strandat 332.346 kb on + strandat 332.347 kb on - strandat 332.347 kb on - strandat 332.376 kb on - strandat 332.475 kb on + strandat 332.476 kb on - strandat 332.487 kb on - strandat 332.616 kb on + strand, within PP_0273at 332.616 kb on + strand, within PP_0273at 332.616 kb on + strand, within PP_0273at 332.617 kb on - strand, within PP_0273at 332.617 kb on - strand, within PP_0273at 332.715 kb on + strandat 332.715 kb on + strandat 332.778 kb on + strandat 332.779 kb on - strandat 332.795 kb on + strandat 332.796 kb on - strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.929 kb on + strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.085 kb on - strand, within PP_5435at 333.085 kb on - strand, within PP_5435at 333.085 kb on - strand, within PP_5435at 333.146 kb on + strand, within PP_5435at 333.153 kb on + strand, within PP_5435at 333.153 kb on + strand, within PP_5435at 333.154 kb on - strand, within PP_5435at 333.522 kb on + strand, within PP_0274at 333.522 kb on + strand, within PP_0274

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol%
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331,479 + PP_0272 0.60 +0.5
331,480 - PP_0272 0.60 -0.4
331,542 + PP_0272 0.62 -0.1
331,542 + PP_0272 0.62 +0.5
331,542 + PP_0272 0.62 +0.3
331,542 + PP_0272 0.62 +0.3
331,543 - PP_0272 0.62 +1.0
331,543 - PP_0272 0.62 -0.9
331,608 + PP_0272 0.65 +0.6
331,609 - PP_0272 0.65 -0.8
331,678 - PP_0272 0.68 +0.8
331,692 + PP_0272 0.69 -0.6
331,692 + PP_0272 0.69 +0.4
331,692 + PP_0272 0.69 +2.0
331,693 - PP_0272 0.69 +0.1
331,693 - PP_0272 0.69 -0.4
331,710 + PP_0272 0.70 -0.5
331,710 + PP_0272 0.70 +0.3
331,710 + PP_0272 0.70 +0.5
331,711 - PP_0272 0.70 +0.5
331,711 - PP_0272 0.70 +1.0
331,711 - PP_0272 0.70 +0.5
331,711 - PP_0272 0.70 -2.8
331,711 - PP_0272 0.70 +0.6
331,719 + PP_0272 0.70 +0.0
331,720 - PP_0272 0.70 +0.5
331,720 - PP_0272 0.70 +0.2
331,728 + PP_0272 0.70 +0.0
331,728 + PP_0272 0.70 +0.4
331,728 + PP_0272 0.70 +0.1
331,729 - PP_0272 0.70 +0.2
331,729 - PP_0272 0.70 +0.4
331,736 + PP_0272 0.71 -1.0
331,803 + PP_0272 0.74 -0.6
331,804 - PP_0272 0.74 +0.0
331,814 + PP_0272 0.74 -1.1
331,814 + PP_0272 0.74 +0.2
331,815 - PP_0272 0.74 -0.8
331,860 + PP_0272 0.76 -0.2
331,860 + PP_0272 0.76 +0.0
331,932 + PP_0272 0.79 -0.8
331,933 - PP_0272 0.79 -1.1
331,964 + PP_0272 0.81 -0.8
332,026 - PP_0272 0.83 +0.5
332,026 - PP_0272 0.83 +1.2
332,026 - PP_0272 0.83 +0.0
332,097 + PP_0272 0.86 +0.6
332,192 + +1.9
332,192 + +0.1
332,192 + +0.9
332,193 - -0.8
332,196 - -1.5
332,265 + +0.1
332,265 + -0.1
332,266 - -0.5
332,325 + -0.7
332,326 - -0.2
332,326 - +0.2
332,326 - +0.4
332,326 - -0.5
332,326 - -0.1
332,326 - +0.5
332,326 - +0.8
332,328 + +0.3
332,328 + +0.3
332,329 - +0.1
332,329 - -0.1
332,329 - +0.4
332,329 - -1.0
332,329 - +0.4
332,329 - +0.5
332,346 + +0.1
332,346 + -0.2
332,347 - -1.7
332,347 - -0.4
332,376 - -0.3
332,475 + +0.6
332,476 - +0.2
332,487 - +0.0
332,616 + PP_0273 0.67 -0.7
332,616 + PP_0273 0.67 -0.5
332,616 + PP_0273 0.67 -1.4
332,617 - PP_0273 0.67 -0.2
332,617 - PP_0273 0.67 -0.4
332,715 + +0.7
332,715 + -1.2
332,778 + -0.5
332,779 - -0.6
332,795 + -0.3
332,796 - -1.2
332,837 + +0.2
332,837 + -0.5
332,837 + -0.6
332,837 + -2.1
332,837 + -0.5
332,838 - -0.8
332,838 - +0.6
332,838 - -0.0
332,838 - +1.0
332,838 - +0.2
332,929 + PP_5435 0.19 +0.1
333,081 - PP_5435 0.62 -1.3
333,081 - PP_5435 0.62 +1.1
333,081 - PP_5435 0.62 -0.2
333,081 - PP_5435 0.62 -0.3
333,084 + PP_5435 0.63 +1.0
333,084 + PP_5435 0.63 +0.3
333,084 + PP_5435 0.63 +0.2
333,084 + PP_5435 0.63 -0.9
333,085 - PP_5435 0.63 -0.2
333,085 - PP_5435 0.63 -0.1
333,085 - PP_5435 0.63 +0.2
333,146 + PP_5435 0.80 -1.6
333,153 + PP_5435 0.82 +0.5
333,153 + PP_5435 0.82 +0.1
333,154 - PP_5435 0.82 +0.4
333,522 + PP_0274 0.56 -0.8
333,522 + PP_0274 0.56 +0.2

Or see this region's nucleotide sequence