Strain Fitness in Pseudomonas putida KT2440 around PP_0167

Experiment: Cholinium lysinate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0166 and PP_0167 overlap by 11 nucleotidesPP_0167 and PP_5429 are separated by 63 nucleotidesPP_5429 and PP_5430 are separated by 85 nucleotidesPP_5430 and PP_0168 are separated by 409 nucleotides PP_0166: PP_0166 - HlyD family secretion protein, at 189,995 to 191,371 _0166 PP_0167: PP_0167 - Toxin secretion ATP-binding protein, at 191,361 to 193,517 _0167 PP_5429: PP_5429 - protein of unknown function, at 193,581 to 193,796 _5429 PP_5430: PP_5430 - protein of unknown function, at 193,882 to 194,085 _5430 PP_0168: PP_0168 - putative surface adhesion protein, at 194,495 to 220,543 _0168 Position (kb) 191 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 190.758 kb on + strand, within PP_0166at 190.758 kb on + strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.779 kb on + strand, within PP_0166at 190.864 kb on - strand, within PP_0166at 190.941 kb on - strand, within PP_0166at 191.162 kb on - strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.193 kb on - strand, within PP_0166at 191.193 kb on - strand, within PP_0166at 191.362 kb on + strandat 191.362 kb on + strandat 191.363 kb on - strandat 191.363 kb on - strandat 191.363 kb on - strandat 191.461 kb on - strandat 191.718 kb on + strandat 191.719 kb on - strand, within PP_0167at 191.831 kb on - strand, within PP_0167at 191.914 kb on + strand, within PP_0167at 191.915 kb on - strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.040 kb on + strand, within PP_0167at 192.041 kb on - strand, within PP_0167at 192.041 kb on - strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.283 kb on + strand, within PP_0167at 192.284 kb on - strand, within PP_0167at 192.284 kb on - strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.414 kb on - strand, within PP_0167at 192.414 kb on - strand, within PP_0167at 192.415 kb on + strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.641 kb on + strand, within PP_0167at 192.642 kb on - strand, within PP_0167at 192.642 kb on - strand, within PP_0167at 192.642 kb on - strand, within PP_0167at 192.748 kb on + strand, within PP_0167at 192.770 kb on + strand, within PP_0167at 192.866 kb on + strand, within PP_0167at 192.866 kb on + strand, within PP_0167at 192.867 kb on - strand, within PP_0167at 192.867 kb on - strand, within PP_0167at 192.867 kb on - strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.869 kb on - strand, within PP_0167at 192.869 kb on - strand, within PP_0167at 192.869 kb on - strand, within PP_0167at 192.882 kb on - strand, within PP_0167at 192.937 kb on + strand, within PP_0167at 192.938 kb on - strand, within PP_0167at 193.009 kb on - strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.129 kb on + strand, within PP_0167at 193.137 kb on + strand, within PP_0167at 193.137 kb on + strand, within PP_0167at 193.189 kb on - strand, within PP_0167at 193.189 kb on - strand, within PP_0167at 193.381 kb on - strandat 193.446 kb on - strandat 193.620 kb on - strand, within PP_5429at 193.626 kb on + strand, within PP_5429at 193.626 kb on + strand, within PP_5429at 193.626 kb on + strand, within PP_5429at 193.627 kb on - strand, within PP_5429at 193.682 kb on + strand, within PP_5429at 193.692 kb on + strand, within PP_5429at 193.692 kb on + strand, within PP_5429at 193.693 kb on - strand, within PP_5429at 193.693 kb on - strand, within PP_5429at 193.773 kb on + strand, within PP_5429at 193.819 kb on + strandat 193.820 kb on - strandat 193.833 kb on - strandat 193.858 kb on + strandat 193.858 kb on + strandat 193.858 kb on + strandat 193.859 kb on - strandat 193.859 kb on - strandat 193.887 kb on + strandat 193.888 kb on - strandat 193.888 kb on - strandat 193.889 kb on + strandat 193.889 kb on + strandat 193.890 kb on - strandat 193.890 kb on - strandat 193.997 kb on + strand, within PP_5430at 193.997 kb on + strand, within PP_5430at 193.998 kb on - strand, within PP_5430at 194.025 kb on + strand, within PP_5430at 194.026 kb on - strand, within PP_5430at 194.096 kb on + strandat 194.096 kb on + strandat 194.138 kb on - strandat 194.150 kb on - strandat 194.192 kb on - strandat 194.192 kb on - strandat 194.208 kb on - strandat 194.208 kb on - strandat 194.221 kb on - strandat 194.235 kb on - strandat 194.253 kb on + strandat 194.254 kb on - strandat 194.254 kb on - strandat 194.254 kb on - strandat 194.283 kb on + strandat 194.284 kb on - strandat 194.284 kb on - strandat 194.284 kb on - strandat 194.289 kb on - strandat 194.294 kb on + strandat 194.309 kb on - strandat 194.309 kb on - strandat 194.338 kb on + strandat 194.422 kb on + strandat 194.423 kb on - strandat 194.441 kb on + strandat 194.467 kb on + strandat 194.468 kb on - strandat 194.508 kb on + strandat 194.508 kb on + strandat 194.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol%
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190,758 + PP_0166 0.55 -2.6
190,758 + PP_0166 0.55 +0.0
190,759 - PP_0166 0.55 -0.6
190,759 - PP_0166 0.55 -0.6
190,779 + PP_0166 0.57 -1.3
190,864 - PP_0166 0.63 -2.6
190,941 - PP_0166 0.69 -1.2
191,162 - PP_0166 0.85 -1.8
191,192 + PP_0166 0.87 -1.1
191,192 + PP_0166 0.87 -1.4
191,192 + PP_0166 0.87 -1.0
191,192 + PP_0166 0.87 -0.6
191,193 - PP_0166 0.87 -0.8
191,193 - PP_0166 0.87 -0.6
191,362 + -0.8
191,362 + -0.5
191,363 - +0.5
191,363 - +0.5
191,363 - -0.8
191,461 - -0.9
191,718 + +1.3
191,719 - PP_0167 0.17 -1.7
191,831 - PP_0167 0.22 -1.7
191,914 + PP_0167 0.26 -0.4
191,915 - PP_0167 0.26 -0.3
192,008 + PP_0167 0.30 -1.3
192,008 + PP_0167 0.30 -0.8
192,008 + PP_0167 0.30 -2.4
192,008 + PP_0167 0.30 -0.3
192,040 + PP_0167 0.31 -1.0
192,041 - PP_0167 0.32 +1.1
192,041 - PP_0167 0.32 -1.2
192,235 + PP_0167 0.41 -1.5
192,235 + PP_0167 0.41 -0.1
192,235 + PP_0167 0.41 -0.8
192,235 + PP_0167 0.41 -0.9
192,235 + PP_0167 0.41 -1.1
192,236 - PP_0167 0.41 -1.0
192,236 - PP_0167 0.41 -0.8
192,236 - PP_0167 0.41 -2.3
192,236 - PP_0167 0.41 -0.4
192,236 - PP_0167 0.41 -1.3
192,236 - PP_0167 0.41 -1.1
192,283 + PP_0167 0.43 -0.5
192,284 - PP_0167 0.43 -0.4
192,284 - PP_0167 0.43 -0.9
192,413 + PP_0167 0.49 -1.0
192,413 + PP_0167 0.49 -1.0
192,413 + PP_0167 0.49 -0.6
192,413 + PP_0167 0.49 -0.5
192,413 + PP_0167 0.49 -0.8
192,413 + PP_0167 0.49 +0.5
192,414 - PP_0167 0.49 -0.7
192,414 - PP_0167 0.49 -0.7
192,415 + PP_0167 0.49 -0.6
192,416 - PP_0167 0.49 -0.9
192,416 - PP_0167 0.49 -0.8
192,416 - PP_0167 0.49 -3.3
192,416 - PP_0167 0.49 -0.7
192,416 - PP_0167 0.49 -0.4
192,416 - PP_0167 0.49 -0.8
192,641 + PP_0167 0.59 -3.3
192,642 - PP_0167 0.59 -0.7
192,642 - PP_0167 0.59 -1.5
192,642 - PP_0167 0.59 -0.5
192,748 + PP_0167 0.64 -0.2
192,770 + PP_0167 0.65 +0.1
192,866 + PP_0167 0.70 -1.7
192,866 + PP_0167 0.70 -0.6
192,867 - PP_0167 0.70 -1.8
192,867 - PP_0167 0.70 -0.2
192,867 - PP_0167 0.70 -1.1
192,868 + PP_0167 0.70 -0.8
192,868 + PP_0167 0.70 -0.1
192,868 + PP_0167 0.70 -1.3
192,868 + PP_0167 0.70 -0.8
192,869 - PP_0167 0.70 -0.1
192,869 - PP_0167 0.70 -2.2
192,869 - PP_0167 0.70 -0.8
192,882 - PP_0167 0.71 -1.3
192,937 + PP_0167 0.73 -1.9
192,938 - PP_0167 0.73 -0.4
193,009 - PP_0167 0.76 -2.5
193,012 + PP_0167 0.77 -1.4
193,012 + PP_0167 0.77 -1.0
193,012 + PP_0167 0.77 -0.7
193,012 + PP_0167 0.77 -1.7
193,012 + PP_0167 0.77 -1.0
193,013 - PP_0167 0.77 -0.1
193,013 - PP_0167 0.77 -0.9
193,013 - PP_0167 0.77 -0.1
193,013 - PP_0167 0.77 -0.2
193,013 - PP_0167 0.77 -0.4
193,013 - PP_0167 0.77 +0.1
193,013 - PP_0167 0.77 -1.1
193,129 + PP_0167 0.82 -0.2
193,137 + PP_0167 0.82 -0.0
193,137 + PP_0167 0.82 -0.6
193,189 - PP_0167 0.85 -1.5
193,189 - PP_0167 0.85 -1.0
193,381 - -1.5
193,446 - +0.9
193,620 - PP_5429 0.18 -1.7
193,626 + PP_5429 0.21 +0.1
193,626 + PP_5429 0.21 -0.2
193,626 + PP_5429 0.21 -1.7
193,627 - PP_5429 0.21 +2.9
193,682 + PP_5429 0.47 -0.1
193,692 + PP_5429 0.51 -0.3
193,692 + PP_5429 0.51 +0.0
193,693 - PP_5429 0.52 -1.0
193,693 - PP_5429 0.52 -0.9
193,773 + PP_5429 0.89 -0.4
193,819 + -0.2
193,820 - -1.3
193,833 - -0.2
193,858 + +0.5
193,858 + +0.3
193,858 + -0.1
193,859 - -0.6
193,859 - +0.8
193,887 + +0.6
193,888 - -0.7
193,888 - -1.5
193,889 + +0.1
193,889 + +0.2
193,890 - -1.2
193,890 - -1.7
193,997 + PP_5430 0.56 +0.5
193,997 + PP_5430 0.56 -1.2
193,998 - PP_5430 0.57 -0.7
194,025 + PP_5430 0.70 -0.1
194,026 - PP_5430 0.71 +0.1
194,096 + -0.1
194,096 + +0.7
194,138 - -0.9
194,150 - -0.4
194,192 - -1.2
194,192 - -1.4
194,208 - -3.0
194,208 - -1.6
194,221 - -0.5
194,235 - -1.0
194,253 + -0.2
194,254 - -0.9
194,254 - -1.2
194,254 - -1.6
194,283 + -0.5
194,284 - -0.7
194,284 - +0.2
194,284 - -1.0
194,289 - -0.9
194,294 + +0.4
194,309 - -0.4
194,309 - -0.2
194,338 + -0.1
194,422 + +0.3
194,423 - -1.4
194,441 + -1.1
194,467 + -1.4
194,468 - -1.0
194,508 + -1.9
194,508 + -2.1
194,509 - -0.8

Or see this region's nucleotide sequence