Experiment: Cholinium lysinate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0116 and PP_0117 are separated by 126 nucleotides PP_0117 and PP_0118 overlap by 8 nucleotides PP_0118 and PP_0119 overlap by 4 nucleotides PP_0119 and PP_0120 are separated by 66 nucleotides
PP_0116: PP_0116 - putative lipoprotein, at 122,251 to 122,958
_0116
PP_0117: PP_0117 - Zn(2+) ABC transporter - permease subunit, at 123,085 to 123,867
_0117
PP_0118: PP_0118 - zinc import ATP-binding protein, at 123,860 to 124,633
_0118
PP_0119: PP_0119 - putative zinc uptake regulation protein ZUR, at 124,630 to 125,115
_0119
PP_0120: PP_0120 - putative zinc ABC transporter, at 125,182 to 126,090
_0120
Position (kb) 123
124
125 Strain fitness (log2 ratio) -2
-1
0
1 at 122.973 kb on - strand at 122.997 kb on + strand at 122.998 kb on - strand at 122.998 kb on - strand at 123.030 kb on + strand at 123.030 kb on + strand at 123.031 kb on - strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.119 kb on - strand at 123.119 kb on - strand at 123.291 kb on + strand, within PP_0117 at 123.292 kb on - strand, within PP_0117 at 123.331 kb on + strand, within PP_0117 at 123.331 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.528 kb on - strand, within PP_0117 at 123.528 kb on - strand, within PP_0117 at 123.788 kb on - strand, within PP_0117 at 123.788 kb on - strand, within PP_0117 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 124.152 kb on + strand, within PP_0118 at 124.152 kb on + strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.188 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.343 kb on + strand, within PP_0118 at 124.344 kb on - strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.420 kb on - strand, within PP_0118 at 124.448 kb on + strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.650 kb on + strand at 124.651 kb on - strand at 124.853 kb on - strand, within PP_0119 at 124.889 kb on + strand, within PP_0119 at 124.889 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.066 kb on - strand, within PP_0119 at 125.066 kb on - strand, within PP_0119 at 125.144 kb on + strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.148 kb on - strand at 125.153 kb on - strand at 125.174 kb on + strand at 125.256 kb on + strand at 125.256 kb on + strand at 125.347 kb on + strand, within PP_0120 at 125.398 kb on + strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.572 kb on - strand, within PP_0120 at 125.572 kb on - strand, within PP_0120
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol% remove 122,973 - +0.9 122,997 + +0.4 122,998 - -0.0 122,998 - +0.0 123,030 + -0.3 123,030 + -1.5 123,031 - -1.4 123,118 + +0.7 123,118 + +0.1 123,119 - +0.3 123,119 - -0.1 123,291 + PP_0117 0.26 +0.4 123,292 - PP_0117 0.26 -0.6 123,331 + PP_0117 0.31 -1.1 123,331 + PP_0117 0.31 +0.3 123,527 + PP_0117 0.56 -0.5 123,527 + PP_0117 0.56 -0.3 123,527 + PP_0117 0.56 -1.4 123,527 + PP_0117 0.56 -0.5 123,527 + PP_0117 0.56 -1.2 123,528 - PP_0117 0.57 +0.4 123,528 - PP_0117 0.57 -0.2 123,788 - PP_0117 0.90 -0.4 123,788 - PP_0117 0.90 -0.4 123,951 + PP_0118 0.12 -0.9 123,951 + PP_0118 0.12 -1.0 123,951 + PP_0118 0.12 +0.7 123,951 + PP_0118 0.12 -1.4 123,952 - PP_0118 0.12 +0.1 123,952 - PP_0118 0.12 -0.6 123,952 - PP_0118 0.12 +0.2 123,952 - PP_0118 0.12 -0.1 123,952 - PP_0118 0.12 +0.2 124,152 + PP_0118 0.38 -0.5 124,152 + PP_0118 0.38 +0.9 124,153 - PP_0118 0.38 +0.6 124,153 - PP_0118 0.38 +0.0 124,153 - PP_0118 0.38 -0.6 124,187 + PP_0118 0.42 -0.4 124,187 + PP_0118 0.42 -0.1 124,188 - PP_0118 0.42 +1.0 124,271 - PP_0118 0.53 -0.9 124,271 - PP_0118 0.53 -0.1 124,343 + PP_0118 0.62 -0.7 124,344 - PP_0118 0.63 -0.5 124,419 + PP_0118 0.72 +0.8 124,419 + PP_0118 0.72 -2.1 124,419 + PP_0118 0.72 -0.9 124,420 - PP_0118 0.72 -0.4 124,448 + PP_0118 0.76 -2.4 124,482 - PP_0118 0.80 +0.3 124,482 - PP_0118 0.80 +0.2 124,650 + -1.4 124,651 - -0.2 124,853 - PP_0119 0.46 -2.3 124,889 + PP_0119 0.53 -0.5 124,889 + PP_0119 0.53 -0.4 125,065 + PP_0119 0.90 -1.4 125,065 + PP_0119 0.90 -0.3 125,065 + PP_0119 0.90 -0.6 125,066 - PP_0119 0.90 -1.2 125,066 - PP_0119 0.90 -0.8 125,144 + +0.1 125,145 - -0.5 125,145 - -0.4 125,145 - -2.3 125,145 - -0.1 125,145 - +0.2 125,147 + -1.5 125,147 + +0.1 125,147 + -1.2 125,147 + -0.6 125,148 - -2.2 125,153 - +1.0 125,174 + -0.4 125,256 + -0.1 125,256 + +0.4 125,347 + PP_0120 0.18 -0.5 125,398 + PP_0120 0.24 -2.4 125,452 - PP_0120 0.30 +0.2 125,452 - PP_0120 0.30 +0.2 125,452 - PP_0120 0.30 +0.8 125,572 - PP_0120 0.43 -0.4 125,572 - PP_0120 0.43 -1.7
Or see this region's nucleotide sequence