Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF475

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF474 and GFF475 are separated by 582 nucleotidesGFF475 and GFF476 are separated by 156 nucleotides GFF474 - Xanthine permease, at 195,168 to 196,493 GFF474 GFF475 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 197,076 to 198,656 GFF475 GFF476 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 198,813 to 199,832 GFF476 Position (kb) 197 198 199Strain fitness (log2 ratio) -1 0 1at 196.151 kb on - strand, within GFF474at 196.265 kb on + strand, within GFF474at 196.266 kb on - strand, within GFF474at 196.290 kb on - strand, within GFF474at 196.343 kb on + strand, within GFF474at 196.344 kb on - strand, within GFF474at 196.344 kb on - strand, within GFF474at 196.451 kb on + strandat 196.575 kb on + strandat 196.578 kb on - strandat 196.640 kb on - strandat 196.831 kb on + strandat 196.867 kb on + strandat 197.026 kb on + strandat 197.027 kb on - strandat 197.054 kb on + strandat 197.145 kb on + strandat 197.205 kb on + strandat 197.205 kb on + strandat 197.205 kb on + strandat 197.206 kb on - strandat 197.225 kb on + strandat 197.226 kb on - strandat 197.230 kb on - strandat 197.297 kb on + strand, within GFF475at 197.312 kb on + strand, within GFF475at 197.333 kb on - strand, within GFF475at 197.336 kb on + strand, within GFF475at 197.336 kb on + strand, within GFF475at 197.448 kb on - strand, within GFF475at 197.448 kb on - strand, within GFF475at 197.466 kb on + strand, within GFF475at 197.472 kb on + strand, within GFF475at 197.600 kb on + strand, within GFF475at 197.600 kb on + strand, within GFF475at 197.616 kb on + strand, within GFF475at 197.724 kb on + strand, within GFF475at 197.928 kb on + strand, within GFF475at 197.937 kb on + strand, within GFF475at 197.937 kb on + strand, within GFF475at 197.938 kb on - strand, within GFF475at 197.938 kb on - strand, within GFF475at 197.940 kb on - strand, within GFF475at 197.940 kb on - strand, within GFF475at 197.991 kb on + strand, within GFF475at 198.081 kb on + strand, within GFF475at 198.092 kb on + strand, within GFF475at 198.202 kb on - strand, within GFF475at 198.221 kb on + strand, within GFF475at 198.282 kb on + strand, within GFF475at 198.282 kb on + strand, within GFF475at 198.282 kb on + strand, within GFF475at 198.438 kb on + strand, within GFF475at 198.438 kb on + strand, within GFF475at 198.439 kb on - strand, within GFF475at 198.440 kb on + strand, within GFF475at 198.441 kb on - strand, within GFF475at 198.441 kb on - strand, within GFF475at 198.508 kb on - strandat 198.750 kb on - strandat 198.750 kb on - strandat 198.980 kb on - strand, within GFF476at 199.009 kb on - strand, within GFF476at 199.020 kb on - strand, within GFF476at 199.020 kb on - strand, within GFF476at 199.045 kb on + strand, within GFF476at 199.100 kb on + strand, within GFF476at 199.239 kb on - strand, within GFF476at 199.239 kb on - strand, within GFF476at 199.239 kb on - strand, within GFF476at 199.239 kb on - strand, within GFF476at 199.239 kb on - strand, within GFF476at 199.239 kb on - strand, within GFF476at 199.407 kb on - strand, within GFF476at 199.424 kb on + strand, within GFF476at 199.424 kb on + strand, within GFF476at 199.425 kb on - strand, within GFF476at 199.518 kb on + strand, within GFF476at 199.519 kb on - strand, within GFF476

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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196,151 - GFF474 0.74 -0.4
196,265 + GFF474 0.83 -1.5
196,266 - GFF474 0.83 -0.1
196,290 - GFF474 0.85 +0.4
196,343 + GFF474 0.89 +0.0
196,344 - GFF474 0.89 -1.3
196,344 - GFF474 0.89 -0.3
196,451 + -0.1
196,575 + +0.1
196,578 - -0.0
196,640 - +1.4
196,831 + -0.0
196,867 + +0.5
197,026 + -0.3
197,027 - +0.1
197,054 + -0.4
197,145 + -0.4
197,205 + -0.3
197,205 + -0.0
197,205 + +0.4
197,206 - +0.2
197,225 + +0.3
197,226 - +0.5
197,230 - +0.2
197,297 + GFF475 0.14 -0.6
197,312 + GFF475 0.15 -0.1
197,333 - GFF475 0.16 -1.0
197,336 + GFF475 0.16 -0.4
197,336 + GFF475 0.16 +0.2
197,448 - GFF475 0.24 +1.1
197,448 - GFF475 0.24 +0.3
197,466 + GFF475 0.25 +0.1
197,472 + GFF475 0.25 +0.7
197,600 + GFF475 0.33 -0.3
197,600 + GFF475 0.33 +0.1
197,616 + GFF475 0.34 +0.1
197,724 + GFF475 0.41 -0.1
197,928 + GFF475 0.54 +0.7
197,937 + GFF475 0.54 -0.4
197,937 + GFF475 0.54 -0.1
197,938 - GFF475 0.55 +0.3
197,938 - GFF475 0.55 +0.4
197,940 - GFF475 0.55 +0.2
197,940 - GFF475 0.55 -0.2
197,991 + GFF475 0.58 +0.2
198,081 + GFF475 0.64 +0.1
198,092 + GFF475 0.64 +1.5
198,202 - GFF475 0.71 -0.5
198,221 + GFF475 0.72 +0.2
198,282 + GFF475 0.76 +0.2
198,282 + GFF475 0.76 +0.1
198,282 + GFF475 0.76 +0.4
198,438 + GFF475 0.86 -0.0
198,438 + GFF475 0.86 +0.2
198,439 - GFF475 0.86 +0.3
198,440 + GFF475 0.86 -0.3
198,441 - GFF475 0.86 +0.3
198,441 - GFF475 0.86 +0.3
198,508 - +0.3
198,750 - -0.6
198,750 - -0.2
198,980 - GFF476 0.16 +0.2
199,009 - GFF476 0.19 -0.0
199,020 - GFF476 0.20 -0.8
199,020 - GFF476 0.20 -0.2
199,045 + GFF476 0.23 -0.3
199,100 + GFF476 0.28 +0.7
199,239 - GFF476 0.42 -0.1
199,239 - GFF476 0.42 +0.9
199,239 - GFF476 0.42 +0.1
199,239 - GFF476 0.42 -1.3
199,239 - GFF476 0.42 -0.2
199,239 - GFF476 0.42 +0.1
199,407 - GFF476 0.58 +0.0
199,424 + GFF476 0.60 -0.0
199,424 + GFF476 0.60 +0.1
199,425 - GFF476 0.60 +0.5
199,518 + GFF476 0.69 +0.4
199,519 - GFF476 0.69 -0.4

Or see this region's nucleotide sequence