Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4715

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4714 and GFF4715 are separated by 17 nucleotidesGFF4715 and GFF4716 are separated by 2 nucleotides GFF4714 - Formate hydrogenlyase subunit 5, at 23,674 to 25,383 GFF4714 GFF4715 - Formate hydrogenlyase subunit 4, at 25,401 to 26,324 GFF4715 GFF4716 - Formate hydrogenlyase subunit 3, at 26,327 to 28,153 GFF4716 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1at 24.480 kb on + strand, within GFF4714at 24.740 kb on + strand, within GFF4714at 24.741 kb on - strand, within GFF4714at 24.882 kb on - strand, within GFF4714at 24.927 kb on + strand, within GFF4714at 25.020 kb on - strand, within GFF4714at 25.030 kb on + strand, within GFF4714at 25.236 kb on - strandat 25.263 kb on - strandat 25.263 kb on - strandat 25.267 kb on + strandat 25.268 kb on - strandat 25.356 kb on - strandat 25.398 kb on - strandat 25.832 kb on - strand, within GFF4715at 25.857 kb on - strand, within GFF4715at 25.857 kb on - strand, within GFF4715at 26.020 kb on + strand, within GFF4715at 26.034 kb on + strand, within GFF4715at 26.512 kb on + strand, within GFF4716at 26.602 kb on + strand, within GFF4716at 26.618 kb on + strand, within GFF4716at 26.864 kb on - strand, within GFF4716at 26.864 kb on - strand, within GFF4716at 26.919 kb on - strand, within GFF4716at 26.970 kb on + strand, within GFF4716at 27.067 kb on + strand, within GFF4716

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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24,480 + GFF4714 0.47 -0.6
24,740 + GFF4714 0.62 -0.2
24,741 - GFF4714 0.62 +0.1
24,882 - GFF4714 0.71 -1.1
24,927 + GFF4714 0.73 +0.5
25,020 - GFF4714 0.79 +0.1
25,030 + GFF4714 0.79 -0.1
25,236 - +1.2
25,263 - +0.0
25,263 - -0.1
25,267 + +0.5
25,268 - +0.2
25,356 - +0.1
25,398 - +0.6
25,832 - GFF4715 0.47 -1.6
25,857 - GFF4715 0.49 +0.9
25,857 - GFF4715 0.49 -1.3
26,020 + GFF4715 0.67 -1.4
26,034 + GFF4715 0.69 -0.2
26,512 + GFF4716 0.10 -2.0
26,602 + GFF4716 0.15 +0.1
26,618 + GFF4716 0.16 -0.4
26,864 - GFF4716 0.29 +1.2
26,864 - GFF4716 0.29 +0.5
26,919 - GFF4716 0.32 +0.2
26,970 + GFF4716 0.35 -0.4
27,067 + GFF4716 0.41 -2.1

Or see this region's nucleotide sequence