Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4505

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4503 and GFF4504 are separated by 2 nucleotidesGFF4504 and GFF4505 are separated by 181 nucleotidesGFF4505 and GFF4506 are separated by 63 nucleotidesGFF4506 and GFF4507 are separated by 35 nucleotides GFF4503 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis, at 290,135 to 290,890 GFF4503 GFF4504 - Proofreading thioesterase in enterobactin biosynthesis EntH, at 290,893 to 291,306 GFF4504 GFF4505 - Carbon starvation protein A, at 291,488 to 293,593 GFF4505 GFF4506 - COG2879, Hypothetical small protein yjiX, at 293,657 to 293,854 GFF4506 GFF4507 - Glycerol dehydrogenase (EC 1.1.1.6), at 293,890 to 294,978 GFF4507 Position (kb) 291 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2at 290.548 kb on + strand, within GFF4503at 290.563 kb on + strand, within GFF4503at 290.584 kb on + strand, within GFF4503at 290.651 kb on - strand, within GFF4503at 290.842 kb on + strandat 290.842 kb on + strandat 290.843 kb on - strandat 290.974 kb on + strand, within GFF4504at 290.975 kb on - strand, within GFF4504at 291.103 kb on + strand, within GFF4504at 291.296 kb on + strandat 291.376 kb on - strandat 291.439 kb on + strandat 291.439 kb on + strandat 291.439 kb on + strandat 291.439 kb on + strandat 291.493 kb on + strandat 291.494 kb on - strandat 291.506 kb on + strandat 291.554 kb on + strandat 291.557 kb on - strandat 291.557 kb on - strandat 291.557 kb on - strandat 291.620 kb on + strandat 291.620 kb on + strandat 291.621 kb on - strandat 291.626 kb on - strandat 291.650 kb on + strandat 291.651 kb on - strandat 291.652 kb on + strandat 291.688 kb on + strandat 291.689 kb on - strandat 291.709 kb on + strand, within GFF4505at 291.725 kb on + strand, within GFF4505at 291.886 kb on + strand, within GFF4505at 292.067 kb on + strand, within GFF4505at 292.067 kb on + strand, within GFF4505at 292.067 kb on + strand, within GFF4505at 292.068 kb on - strand, within GFF4505at 292.113 kb on - strand, within GFF4505at 292.186 kb on + strand, within GFF4505at 292.230 kb on - strand, within GFF4505at 292.274 kb on + strand, within GFF4505at 292.480 kb on + strand, within GFF4505at 292.480 kb on + strand, within GFF4505at 292.637 kb on - strand, within GFF4505at 292.639 kb on + strand, within GFF4505at 292.739 kb on - strand, within GFF4505at 292.808 kb on - strand, within GFF4505at 292.861 kb on - strand, within GFF4505at 293.051 kb on - strand, within GFF4505at 293.443 kb on + strandat 293.477 kb on - strandat 293.600 kb on + strandat 293.608 kb on + strandat 293.688 kb on - strand, within GFF4506at 293.738 kb on + strand, within GFF4506at 293.738 kb on + strand, within GFF4506at 293.738 kb on + strand, within GFF4506at 293.739 kb on - strand, within GFF4506at 293.739 kb on - strand, within GFF4506at 293.739 kb on - strand, within GFF4506at 293.786 kb on + strand, within GFF4506at 293.786 kb on + strand, within GFF4506at 293.787 kb on - strand, within GFF4506at 293.787 kb on - strand, within GFF4506at 293.894 kb on - strandat 293.960 kb on + strandat 293.988 kb on + strandat 294.230 kb on + strand, within GFF4507at 294.460 kb on - strand, within GFF4507at 294.482 kb on + strand, within GFF4507at 294.482 kb on + strand, within GFF4507at 294.483 kb on - strand, within GFF4507at 294.582 kb on - strand, within GFF4507at 294.582 kb on - strand, within GFF4507

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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290,548 + GFF4503 0.55 -1.4
290,563 + GFF4503 0.57 +0.8
290,584 + GFF4503 0.59 -0.7
290,651 - GFF4503 0.68 +0.2
290,842 + +1.2
290,842 + -0.3
290,843 - +0.2
290,974 + GFF4504 0.20 +1.2
290,975 - GFF4504 0.20 +0.2
291,103 + GFF4504 0.51 +0.4
291,296 + -0.1
291,376 - +0.2
291,439 + +0.1
291,439 + +0.6
291,439 + +0.1
291,439 + -0.2
291,493 + +0.4
291,494 - +1.2
291,506 + -0.5
291,554 + +0.0
291,557 - -0.4
291,557 - +0.3
291,557 - -0.6
291,620 + -0.0
291,620 + +0.2
291,621 - -0.8
291,626 - -0.5
291,650 + +1.3
291,651 - +1.4
291,652 + +1.1
291,688 + -0.9
291,689 - +0.5
291,709 + GFF4505 0.10 -0.9
291,725 + GFF4505 0.11 +0.4
291,886 + GFF4505 0.19 -1.6
292,067 + GFF4505 0.27 -0.2
292,067 + GFF4505 0.27 +0.6
292,067 + GFF4505 0.27 -0.1
292,068 - GFF4505 0.28 -0.5
292,113 - GFF4505 0.30 +1.8
292,186 + GFF4505 0.33 +0.1
292,230 - GFF4505 0.35 -0.2
292,274 + GFF4505 0.37 +0.6
292,480 + GFF4505 0.47 +1.8
292,480 + GFF4505 0.47 -0.7
292,637 - GFF4505 0.55 -0.1
292,639 + GFF4505 0.55 -0.0
292,739 - GFF4505 0.59 +0.8
292,808 - GFF4505 0.63 +0.0
292,861 - GFF4505 0.65 +0.4
293,051 - GFF4505 0.74 +0.5
293,443 + -0.1
293,477 - +0.0
293,600 + +1.6
293,608 + +0.4
293,688 - GFF4506 0.16 +0.4
293,738 + GFF4506 0.41 +0.8
293,738 + GFF4506 0.41 -0.5
293,738 + GFF4506 0.41 +0.8
293,739 - GFF4506 0.41 -0.1
293,739 - GFF4506 0.41 +0.0
293,739 - GFF4506 0.41 +0.2
293,786 + GFF4506 0.65 +0.0
293,786 + GFF4506 0.65 -0.2
293,787 - GFF4506 0.66 +0.2
293,787 - GFF4506 0.66 +0.4
293,894 - -0.4
293,960 + +0.1
293,988 + -1.8
294,230 + GFF4507 0.31 +0.1
294,460 - GFF4507 0.52 +0.4
294,482 + GFF4507 0.54 +0.2
294,482 + GFF4507 0.54 -1.1
294,483 - GFF4507 0.54 -0.6
294,582 - GFF4507 0.64 +0.1
294,582 - GFF4507 0.64 -1.0

Or see this region's nucleotide sequence