Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4304

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4302 and GFF4303 are separated by 209 nucleotidesGFF4303 and GFF4304 are separated by 93 nucleotidesGFF4304 and GFF4305 are separated by 196 nucleotides GFF4302 - Alkyl hydroperoxide reductase subunit C-like protein, at 88,285 to 88,887 GFF4302 GFF4303 - Acyl carrier protein phosphodiesterase (EC 3.1.4.14), at 89,097 to 89,678 GFF4303 GFF4304 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-), at 89,772 to 90,836 GFF4304 GFF4305 - tRNA-guanine transglycosylase (EC 2.4.2.29), at 91,033 to 92,160 GFF4305 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1at 88.937 kb on + strandat 89.130 kb on - strandat 89.538 kb on - strand, within GFF4303at 89.550 kb on + strand, within GFF4303at 89.550 kb on - strand, within GFF4303at 89.550 kb on - strand, within GFF4303at 89.550 kb on - strand, within GFF4303at 89.551 kb on + strand, within GFF4303at 89.551 kb on + strand, within GFF4303at 89.552 kb on - strand, within GFF4303at 89.562 kb on + strand, within GFF4303at 89.864 kb on - strandat 90.225 kb on + strand, within GFF4304at 90.226 kb on - strand, within GFF4304at 90.589 kb on + strand, within GFF4304at 90.624 kb on + strand, within GFF4304at 90.633 kb on + strand, within GFF4304at 90.741 kb on + strandat 90.743 kb on + strandat 90.744 kb on - strandat 90.744 kb on - strandat 90.744 kb on - strandat 90.754 kb on + strandat 90.776 kb on + strandat 90.804 kb on + strandat 90.804 kb on + strandat 90.805 kb on - strandat 90.891 kb on - strandat 90.967 kb on + strandat 90.967 kb on + strandat 91.031 kb on + strandat 91.046 kb on + strandat 91.119 kb on + strandat 91.135 kb on + strandat 91.136 kb on - strandat 91.493 kb on - strand, within GFF4305at 91.498 kb on - strand, within GFF4305at 91.701 kb on + strand, within GFF4305at 91.815 kb on + strand, within GFF4305at 91.815 kb on + strand, within GFF4305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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88,937 + -0.7
89,130 - -0.5
89,538 - GFF4303 0.76 -0.2
89,550 + GFF4303 0.78 +0.2
89,550 - GFF4303 0.78 -0.2
89,550 - GFF4303 0.78 +0.4
89,550 - GFF4303 0.78 +0.2
89,551 + GFF4303 0.78 -0.3
89,551 + GFF4303 0.78 +0.2
89,552 - GFF4303 0.78 -0.2
89,562 + GFF4303 0.80 +0.7
89,864 - +0.1
90,225 + GFF4304 0.43 -2.3
90,226 - GFF4304 0.43 -0.8
90,589 + GFF4304 0.77 -0.3
90,624 + GFF4304 0.80 +0.8
90,633 + GFF4304 0.81 -0.7
90,741 + +0.0
90,743 + -0.0
90,744 - -0.2
90,744 - +0.6
90,744 - -0.7
90,754 + +0.2
90,776 + -0.0
90,804 + +0.7
90,804 + +0.2
90,805 - -0.1
90,891 - -1.2
90,967 + -0.5
90,967 + +0.0
91,031 + -0.4
91,046 + +0.8
91,119 + -0.7
91,135 + +0.0
91,136 - +0.2
91,493 - GFF4305 0.41 +0.0
91,498 - GFF4305 0.41 -0.5
91,701 + GFF4305 0.59 -0.2
91,815 + GFF4305 0.69 +0.2
91,815 + GFF4305 0.69 -0.6

Or see this region's nucleotide sequence