Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4154

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4153 and GFF4154 overlap by 20 nucleotidesGFF4154 and GFF4155 overlap by 4 nucleotides GFF4153 - Type I secretion system, membrane fusion protein LapC, at 33,621 to 34,811 GFF4153 GFF4154 - Type I secretion system ATPase, LssB family LapB, at 34,792 to 36,972 GFF4154 GFF4155 - Type I secretion system, outer membrane component LapE, at 36,969 to 38,378 GFF4155 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 33.871 kb on + strand, within GFF4153at 33.927 kb on - strand, within GFF4153at 34.177 kb on + strand, within GFF4153at 34.178 kb on - strand, within GFF4153at 34.431 kb on + strand, within GFF4153at 34.432 kb on - strand, within GFF4153at 34.432 kb on - strand, within GFF4153at 34.982 kb on - strandat 34.982 kb on - strandat 35.007 kb on + strandat 35.008 kb on - strandat 35.041 kb on + strand, within GFF4154at 35.049 kb on + strand, within GFF4154at 35.248 kb on + strand, within GFF4154at 35.303 kb on - strand, within GFF4154at 35.722 kb on - strand, within GFF4154at 35.722 kb on - strand, within GFF4154at 35.722 kb on - strand, within GFF4154at 35.768 kb on + strand, within GFF4154at 35.768 kb on + strand, within GFF4154at 35.769 kb on - strand, within GFF4154at 35.802 kb on + strand, within GFF4154at 35.850 kb on + strand, within GFF4154at 35.851 kb on - strand, within GFF4154at 35.859 kb on - strand, within GFF4154at 35.859 kb on - strand, within GFF4154at 35.859 kb on - strand, within GFF4154at 35.859 kb on - strand, within GFF4154at 35.862 kb on + strand, within GFF4154at 35.862 kb on + strand, within GFF4154at 35.904 kb on + strand, within GFF4154at 35.908 kb on - strand, within GFF4154at 36.087 kb on + strand, within GFF4154at 36.088 kb on - strand, within GFF4154at 36.138 kb on + strand, within GFF4154at 36.139 kb on - strand, within GFF4154at 36.205 kb on - strand, within GFF4154at 36.364 kb on - strand, within GFF4154at 36.369 kb on - strand, within GFF4154at 36.466 kb on + strand, within GFF4154at 36.470 kb on + strand, within GFF4154at 36.471 kb on - strand, within GFF4154at 36.471 kb on - strand, within GFF4154at 36.528 kb on + strand, within GFF4154at 36.529 kb on - strand, within GFF4154at 36.585 kb on - strand, within GFF4154at 36.676 kb on - strand, within GFF4154at 36.742 kb on - strand, within GFF4154at 36.832 kb on - strandat 36.896 kb on + strandat 36.950 kb on - strandat 37.040 kb on + strandat 37.042 kb on + strandat 37.042 kb on + strandat 37.108 kb on + strandat 37.177 kb on + strand, within GFF4155at 37.405 kb on + strand, within GFF4155at 37.439 kb on - strand, within GFF4155at 37.442 kb on + strand, within GFF4155at 37.462 kb on - strand, within GFF4155at 37.508 kb on - strand, within GFF4155at 37.799 kb on + strand, within GFF4155at 37.843 kb on - strand, within GFF4155at 37.869 kb on + strand, within GFF4155at 37.870 kb on - strand, within GFF4155at 37.870 kb on - strand, within GFF4155

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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33,871 + GFF4153 0.21 +0.8
33,927 - GFF4153 0.26 +0.2
34,177 + GFF4153 0.47 +0.9
34,178 - GFF4153 0.47 +0.6
34,431 + GFF4153 0.68 -0.1
34,432 - GFF4153 0.68 +0.3
34,432 - GFF4153 0.68 +0.7
34,982 - +0.0
34,982 - -0.2
35,007 + +0.3
35,008 - -0.4
35,041 + GFF4154 0.11 -0.4
35,049 + GFF4154 0.12 +0.8
35,248 + GFF4154 0.21 +0.1
35,303 - GFF4154 0.23 +1.3
35,722 - GFF4154 0.43 +0.4
35,722 - GFF4154 0.43 +0.4
35,722 - GFF4154 0.43 +0.1
35,768 + GFF4154 0.45 +0.2
35,768 + GFF4154 0.45 +0.2
35,769 - GFF4154 0.45 -0.9
35,802 + GFF4154 0.46 -0.2
35,850 + GFF4154 0.49 -0.9
35,851 - GFF4154 0.49 -1.1
35,859 - GFF4154 0.49 +0.6
35,859 - GFF4154 0.49 -0.2
35,859 - GFF4154 0.49 +1.7
35,859 - GFF4154 0.49 +0.6
35,862 + GFF4154 0.49 +0.0
35,862 + GFF4154 0.49 +0.3
35,904 + GFF4154 0.51 -1.0
35,908 - GFF4154 0.51 +0.1
36,087 + GFF4154 0.59 +0.0
36,088 - GFF4154 0.59 +0.3
36,138 + GFF4154 0.62 -1.1
36,139 - GFF4154 0.62 -0.7
36,205 - GFF4154 0.65 +0.7
36,364 - GFF4154 0.72 -0.2
36,369 - GFF4154 0.72 +0.9
36,466 + GFF4154 0.77 +0.7
36,470 + GFF4154 0.77 +0.3
36,471 - GFF4154 0.77 -0.2
36,471 - GFF4154 0.77 +0.1
36,528 + GFF4154 0.80 -0.3
36,529 - GFF4154 0.80 -0.0
36,585 - GFF4154 0.82 +1.1
36,676 - GFF4154 0.86 +0.0
36,742 - GFF4154 0.89 -0.0
36,832 - -0.0
36,896 + -0.1
36,950 - +0.2
37,040 + -0.2
37,042 + +0.3
37,042 + +0.2
37,108 + -0.5
37,177 + GFF4155 0.15 -0.7
37,405 + GFF4155 0.31 +0.2
37,439 - GFF4155 0.33 +0.3
37,442 + GFF4155 0.34 -0.4
37,462 - GFF4155 0.35 +0.3
37,508 - GFF4155 0.38 +0.0
37,799 + GFF4155 0.59 +0.3
37,843 - GFF4155 0.62 -2.5
37,869 + GFF4155 0.64 +0.6
37,870 - GFF4155 0.64 +0.2
37,870 - GFF4155 0.64 +0.6

Or see this region's nucleotide sequence