Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF211

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF209 and GFF210 are separated by 53 nucleotidesGFF210 and GFF211 are separated by 108 nucleotidesGFF211 and GFF212 are separated by 76 nucleotidesGFF212 and GFF213 are separated by 273 nucleotides GFF209 - Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-), at 204,973 to 206,526 GFF209 GFF210 - Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-), at 206,580 to 207,365 GFF210 GFF211 - Carnitine operon protein CaiE, at 207,474 to 208,070 GFF211 GFF212 - Transcriptional activatory protein CaiF, at 208,147 to 208,542 GFF212 GFF213 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 208,816 to 212,043 GFF213 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 206.560 kb on + strandat 206.627 kb on + strandat 206.776 kb on + strand, within GFF210at 207.211 kb on - strand, within GFF210at 207.402 kb on + strandat 207.467 kb on + strandat 207.468 kb on - strandat 207.473 kb on + strandat 207.473 kb on + strandat 207.473 kb on + strandat 207.474 kb on - strandat 207.474 kb on - strandat 207.474 kb on - strandat 207.481 kb on - strandat 207.481 kb on - strandat 207.579 kb on + strand, within GFF211at 207.580 kb on - strand, within GFF211at 207.581 kb on + strand, within GFF211at 207.641 kb on + strand, within GFF211at 207.663 kb on - strand, within GFF211at 207.663 kb on - strand, within GFF211at 207.672 kb on + strand, within GFF211at 207.731 kb on - strand, within GFF211at 207.782 kb on + strand, within GFF211at 207.896 kb on - strand, within GFF211at 207.948 kb on + strand, within GFF211at 208.069 kb on - strandat 208.069 kb on - strandat 208.114 kb on + strandat 208.403 kb on + strand, within GFF212at 208.680 kb on - strandat 208.772 kb on + strandat 208.774 kb on + strandat 208.775 kb on - strandat 208.859 kb on - strandat 208.926 kb on - strandat 208.935 kb on + strandat 209.005 kb on - strandat 209.005 kb on - strandat 209.005 kb on - strandat 209.005 kb on - strandat 209.009 kb on + strandat 209.009 kb on + strandat 209.009 kb on + strandat 209.010 kb on - strandat 209.010 kb on - strandat 209.010 kb on - strandat 209.010 kb on - strandat 209.010 kb on - strandat 209.013 kb on + strandat 209.013 kb on + strandat 209.013 kb on + strandat 209.014 kb on - strandat 209.014 kb on - strandat 209.014 kb on - strandat 209.014 kb on - strandat 209.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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206,560 + +1.1
206,627 + +0.6
206,776 + GFF210 0.25 -0.7
207,211 - GFF210 0.80 -0.1
207,402 + -1.0
207,467 + -1.5
207,468 - -0.2
207,473 + -0.5
207,473 + -0.5
207,473 + +0.3
207,474 - +2.1
207,474 - -1.6
207,474 - -0.4
207,481 - -0.0
207,481 - +0.2
207,579 + GFF211 0.18 -2.5
207,580 - GFF211 0.18 -0.6
207,581 + GFF211 0.18 +0.0
207,641 + GFF211 0.28 -0.1
207,663 - GFF211 0.32 +0.4
207,663 - GFF211 0.32 -0.5
207,672 + GFF211 0.33 -0.0
207,731 - GFF211 0.43 +0.4
207,782 + GFF211 0.52 +0.4
207,896 - GFF211 0.71 -0.8
207,948 + GFF211 0.79 +0.3
208,069 - -0.3
208,069 - +0.0
208,114 + +0.3
208,403 + GFF212 0.65 +2.1
208,680 - -0.0
208,772 + +0.6
208,774 + +0.1
208,775 - +0.7
208,859 - +0.3
208,926 - +0.6
208,935 + -0.1
209,005 - +0.8
209,005 - +0.5
209,005 - +0.4
209,005 - +0.3
209,009 + +1.4
209,009 + +1.1
209,009 + +0.3
209,010 - -0.5
209,010 - +0.7
209,010 - -0.0
209,010 - +0.4
209,010 - -0.2
209,013 + +0.7
209,013 + +0.3
209,013 + +0.2
209,014 - +1.5
209,014 - +0.3
209,014 - +0.8
209,014 - +0.7
209,014 - +0.7

Or see this region's nucleotide sequence