Strain Fitness in Agrobacterium fabrum C58 around Atu6083

Experiment: Orotic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6082 and Atu6083 are separated by 3 nucleotidesAtu6083 and Atu6084 are separated by 351 nucleotides Atu6082: Atu6082 - AAA-family ATPase, at 97,822 to 98,859 Atu6082 Atu6083: Atu6083 - conserved hypothetical protein, at 98,863 to 101,373 Atu6083 Atu6084: Atu6084 - nitrilotriacetate monooxygenase, component A, at 101,725 to 103,077 Atu6084 Position (kb) 98 99 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 98.843 kb on - strandat 98.920 kb on + strandat 98.940 kb on + strandat 98.981 kb on - strandat 98.983 kb on - strandat 98.988 kb on - strandat 98.990 kb on + strandat 98.990 kb on + strandat 98.990 kb on + strandat 98.992 kb on + strandat 98.998 kb on - strandat 98.998 kb on - strandat 99.007 kb on + strandat 99.010 kb on - strandat 99.113 kb on - strandat 99.220 kb on + strand, within Atu6083at 99.282 kb on + strand, within Atu6083at 99.359 kb on - strand, within Atu6083at 99.360 kb on - strand, within Atu6083at 99.363 kb on + strand, within Atu6083at 99.363 kb on + strand, within Atu6083at 99.371 kb on - strand, within Atu6083at 99.371 kb on - strand, within Atu6083at 99.371 kb on - strand, within Atu6083at 99.371 kb on - strand, within Atu6083at 99.387 kb on + strand, within Atu6083at 99.387 kb on + strand, within Atu6083at 99.400 kb on - strand, within Atu6083at 99.404 kb on - strand, within Atu6083at 99.432 kb on + strand, within Atu6083at 99.452 kb on + strand, within Atu6083at 99.453 kb on + strand, within Atu6083at 99.621 kb on + strand, within Atu6083at 99.650 kb on + strand, within Atu6083at 99.658 kb on - strand, within Atu6083at 99.676 kb on - strand, within Atu6083at 99.681 kb on + strand, within Atu6083at 99.681 kb on + strand, within Atu6083at 99.681 kb on + strand, within Atu6083at 99.681 kb on + strand, within Atu6083at 99.856 kb on - strand, within Atu6083at 99.879 kb on + strand, within Atu6083at 99.928 kb on + strand, within Atu6083at 100.069 kb on - strand, within Atu6083at 100.076 kb on + strand, within Atu6083at 100.081 kb on + strand, within Atu6083at 100.084 kb on - strand, within Atu6083at 100.089 kb on - strand, within Atu6083at 100.089 kb on - strand, within Atu6083at 100.127 kb on + strand, within Atu6083at 100.150 kb on - strand, within Atu6083at 100.244 kb on + strand, within Atu6083at 100.272 kb on + strand, within Atu6083at 100.291 kb on + strand, within Atu6083at 100.348 kb on - strand, within Atu6083at 100.404 kb on - strand, within Atu6083at 100.426 kb on + strand, within Atu6083at 100.477 kb on + strand, within Atu6083at 100.503 kb on + strand, within Atu6083at 100.511 kb on - strand, within Atu6083at 100.522 kb on + strand, within Atu6083at 100.522 kb on + strand, within Atu6083at 100.549 kb on + strand, within Atu6083at 100.557 kb on - strand, within Atu6083at 100.557 kb on - strand, within Atu6083at 100.577 kb on + strand, within Atu6083at 100.583 kb on + strand, within Atu6083at 100.598 kb on + strand, within Atu6083at 100.610 kb on + strand, within Atu6083at 100.610 kb on + strand, within Atu6083at 100.615 kb on + strand, within Atu6083at 100.744 kb on + strand, within Atu6083at 100.754 kb on + strand, within Atu6083at 100.816 kb on + strand, within Atu6083at 100.830 kb on + strand, within Atu6083at 100.842 kb on + strand, within Atu6083at 100.850 kb on - strand, within Atu6083at 100.868 kb on + strand, within Atu6083at 100.871 kb on - strand, within Atu6083at 100.881 kb on + strand, within Atu6083at 100.941 kb on + strand, within Atu6083at 100.946 kb on + strand, within Atu6083at 100.946 kb on + strand, within Atu6083at 100.946 kb on + strand, within Atu6083at 100.954 kb on - strand, within Atu6083at 101.101 kb on + strand, within Atu6083at 101.122 kb on - strand, within Atu6083at 101.122 kb on - strand, within Atu6083at 101.122 kb on - strand, within Atu6083at 101.241 kb on + strandat 101.247 kb on + strandat 101.247 kb on + strandat 101.255 kb on - strandat 101.255 kb on - strandat 101.255 kb on - strandat 101.264 kb on + strandat 101.272 kb on - strandat 101.274 kb on + strandat 101.283 kb on + strandat 101.375 kb on + strandat 101.376 kb on - strandat 101.445 kb on + strandat 101.481 kb on + strandat 101.489 kb on - strandat 101.489 kb on - strandat 101.489 kb on - strandat 101.506 kb on - strandat 101.508 kb on + strandat 101.516 kb on - strandat 101.516 kb on - strandat 101.710 kb on - strandat 101.758 kb on + strandat 101.760 kb on + strandat 101.760 kb on + strandat 101.761 kb on - strandat 101.817 kb on + strandat 101.817 kb on + strandat 101.817 kb on + strandat 101.825 kb on - strandat 101.825 kb on - strandat 101.825 kb on - strandat 101.825 kb on - strandat 101.845 kb on - strandat 101.880 kb on + strand, within Atu6084at 101.923 kb on + strand, within Atu6084at 101.928 kb on + strand, within Atu6084at 101.953 kb on + strand, within Atu6084at 101.953 kb on + strand, within Atu6084at 101.954 kb on - strand, within Atu6084at 101.960 kb on - strand, within Atu6084at 101.961 kb on - strand, within Atu6084at 101.961 kb on - strand, within Atu6084at 101.971 kb on - strand, within Atu6084at 101.973 kb on + strand, within Atu6084at 101.973 kb on + strand, within Atu6084at 101.999 kb on + strand, within Atu6084at 102.002 kb on - strand, within Atu6084at 102.012 kb on + strand, within Atu6084at 102.091 kb on + strand, within Atu6084at 102.091 kb on + strand, within Atu6084at 102.099 kb on - strand, within Atu6084at 102.100 kb on + strand, within Atu6084at 102.158 kb on + strand, within Atu6084at 102.170 kb on - strand, within Atu6084at 102.206 kb on - strand, within Atu6084at 102.210 kb on + strand, within Atu6084at 102.312 kb on - strand, within Atu6084at 102.349 kb on + strand, within Atu6084at 102.357 kb on - strand, within Atu6084at 102.357 kb on - strand, within Atu6084

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Per-strain Table

Position Strand Gene LocusTag Fraction Orotic (N)
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98,843 - +0.4
98,920 + -0.2
98,940 + +0.3
98,981 - +0.4
98,983 - +0.4
98,988 - +1.9
98,990 + +1.3
98,990 + +2.0
98,990 + +1.7
98,992 + +0.2
98,998 - +0.6
98,998 - +5.2
99,007 + +1.3
99,010 - +0.3
99,113 - +1.3
99,220 + Atu6083 0.14 +0.9
99,282 + Atu6083 0.17 +0.3
99,359 - Atu6083 0.20 +0.5
99,360 - Atu6083 0.20 +0.8
99,363 + Atu6083 0.20 +0.9
99,363 + Atu6083 0.20 +0.8
99,371 - Atu6083 0.20 +0.9
99,371 - Atu6083 0.20 +0.5
99,371 - Atu6083 0.20 -0.4
99,371 - Atu6083 0.20 +1.6
99,387 + Atu6083 0.21 +0.5
99,387 + Atu6083 0.21 +1.3
99,400 - Atu6083 0.21 +0.4
99,404 - Atu6083 0.22 +0.7
99,432 + Atu6083 0.23 +0.5
99,452 + Atu6083 0.23 +0.1
99,453 + Atu6083 0.23 -0.1
99,621 + Atu6083 0.30 +1.0
99,650 + Atu6083 0.31 +4.2
99,658 - Atu6083 0.32 +2.2
99,676 - Atu6083 0.32 +1.1
99,681 + Atu6083 0.33 +0.4
99,681 + Atu6083 0.33 +2.4
99,681 + Atu6083 0.33 -0.2
99,681 + Atu6083 0.33 +0.5
99,856 - Atu6083 0.40 -0.4
99,879 + Atu6083 0.40 +1.0
99,928 + Atu6083 0.42 +0.2
100,069 - Atu6083 0.48 -0.8
100,076 + Atu6083 0.48 +0.9
100,081 + Atu6083 0.49 +0.8
100,084 - Atu6083 0.49 +0.4
100,089 - Atu6083 0.49 -0.4
100,089 - Atu6083 0.49 -0.5
100,127 + Atu6083 0.50 -0.4
100,150 - Atu6083 0.51 -0.1
100,244 + Atu6083 0.55 +0.4
100,272 + Atu6083 0.56 +2.4
100,291 + Atu6083 0.57 +0.3
100,348 - Atu6083 0.59 +0.4
100,404 - Atu6083 0.61 -0.4
100,426 + Atu6083 0.62 +0.6
100,477 + Atu6083 0.64 +0.6
100,503 + Atu6083 0.65 +0.2
100,511 - Atu6083 0.66 +1.6
100,522 + Atu6083 0.66 -0.5
100,522 + Atu6083 0.66 +1.2
100,549 + Atu6083 0.67 +1.2
100,557 - Atu6083 0.67 -0.0
100,557 - Atu6083 0.67 +0.8
100,577 + Atu6083 0.68 +1.2
100,583 + Atu6083 0.68 +0.6
100,598 + Atu6083 0.69 -0.0
100,610 + Atu6083 0.70 -0.1
100,610 + Atu6083 0.70 +3.0
100,615 + Atu6083 0.70 +0.3
100,744 + Atu6083 0.75 +1.4
100,754 + Atu6083 0.75 -1.0
100,816 + Atu6083 0.78 -0.6
100,830 + Atu6083 0.78 -0.7
100,842 + Atu6083 0.79 +0.6
100,850 - Atu6083 0.79 +0.3
100,868 + Atu6083 0.80 +2.1
100,871 - Atu6083 0.80 +2.5
100,881 + Atu6083 0.80 +0.2
100,941 + Atu6083 0.83 +0.0
100,946 + Atu6083 0.83 +0.4
100,946 + Atu6083 0.83 +2.2
100,946 + Atu6083 0.83 +1.0
100,954 - Atu6083 0.83 +1.6
101,101 + Atu6083 0.89 -1.1
101,122 - Atu6083 0.90 +0.3
101,122 - Atu6083 0.90 +0.8
101,122 - Atu6083 0.90 +0.2
101,241 + +0.2
101,247 + +0.8
101,247 + +0.3
101,255 - +2.2
101,255 - +1.0
101,255 - +1.4
101,264 + +1.9
101,272 - +1.0
101,274 + +0.8
101,283 + +1.6
101,375 + +1.4
101,376 - -0.0
101,445 + -0.4
101,481 + +0.6
101,489 - +0.5
101,489 - +0.7
101,489 - +0.3
101,506 - +2.0
101,508 + +0.1
101,516 - +0.7
101,516 - +1.9
101,710 - +0.7
101,758 + -2.2
101,760 + +1.6
101,760 + -0.2
101,761 - +0.7
101,817 + -0.1
101,817 + -1.6
101,817 + +0.5
101,825 - +1.7
101,825 - +1.0
101,825 - +0.1
101,825 - -1.1
101,845 - -0.4
101,880 + Atu6084 0.11 +1.6
101,923 + Atu6084 0.15 -0.1
101,928 + Atu6084 0.15 -0.4
101,953 + Atu6084 0.17 +0.7
101,953 + Atu6084 0.17 +1.5
101,954 - Atu6084 0.17 +0.7
101,960 - Atu6084 0.17 +0.5
101,961 - Atu6084 0.17 +1.9
101,961 - Atu6084 0.17 -0.6
101,971 - Atu6084 0.18 +1.5
101,973 + Atu6084 0.18 +0.9
101,973 + Atu6084 0.18 +0.8
101,999 + Atu6084 0.20 +0.4
102,002 - Atu6084 0.20 +1.9
102,012 + Atu6084 0.21 +0.8
102,091 + Atu6084 0.27 -1.2
102,091 + Atu6084 0.27 +0.8
102,099 - Atu6084 0.28 -0.1
102,100 + Atu6084 0.28 +2.9
102,158 + Atu6084 0.32 +0.3
102,170 - Atu6084 0.33 +0.2
102,206 - Atu6084 0.36 +1.7
102,210 + Atu6084 0.36 +2.2
102,312 - Atu6084 0.43 +2.8
102,349 + Atu6084 0.46 +1.5
102,357 - Atu6084 0.47 +1.4
102,357 - Atu6084 0.47 +1.4

Or see this region's nucleotide sequence