Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_186

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_185 and PfGW456L13_186 are separated by 33 nucleotidesPfGW456L13_186 and PfGW456L13_187 overlap by 13 nucleotides PfGW456L13_185 - Predicted hydroxymethylpyrimidine transporter CytX, at 209,985 to 211,277 _185 PfGW456L13_186 - hypothetical protein, at 211,311 to 211,442 _186 PfGW456L13_187 - Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17), at 211,430 to 213,319 _187 Position (kb) 211 212Strain fitness (log2 ratio) -2 -1 0 1 2 3at 210.502 kb on + strand, within PfGW456L13_185at 210.502 kb on + strand, within PfGW456L13_185at 210.503 kb on - strand, within PfGW456L13_185at 210.764 kb on + strand, within PfGW456L13_185at 210.875 kb on + strand, within PfGW456L13_185at 211.219 kb on - strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.256 kb on - strandat 211.256 kb on - strandat 211.256 kb on - strandat 211.284 kb on + strandat 211.284 kb on + strandat 211.285 kb on - strandat 211.285 kb on - strandat 211.310 kb on + strandat 211.310 kb on + strandat 211.310 kb on + strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.443 kb on + strandat 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.854 kb on + strand, within PfGW456L13_187at 211.854 kb on + strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.920 kb on + strand, within PfGW456L13_187at 211.959 kb on + strand, within PfGW456L13_187at 211.960 kb on - strand, within PfGW456L13_187at 211.960 kb on - strand, within PfGW456L13_187at 212.181 kb on + strand, within PfGW456L13_187at 212.182 kb on - strand, within PfGW456L13_187at 212.182 kb on - strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.221 kb on - strand, within PfGW456L13_187at 212.221 kb on - strand, within PfGW456L13_187at 212.320 kb on - strand, within PfGW456L13_187at 212.320 kb on - strand, within PfGW456L13_187at 212.353 kb on - strand, within PfGW456L13_187

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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210,502 + PfGW456L13_185 0.40 +0.3
210,502 + PfGW456L13_185 0.40 -0.3
210,503 - PfGW456L13_185 0.40 -0.0
210,764 + PfGW456L13_185 0.60 +0.6
210,875 + PfGW456L13_185 0.69 +0.2
211,219 - +0.5
211,255 + -1.9
211,255 + -1.7
211,255 + -0.0
211,255 + -0.1
211,255 + +0.9
211,255 + +0.1
211,255 + -0.5
211,255 + +1.9
211,256 - +0.3
211,256 - -0.6
211,256 - +0.6
211,284 + +0.8
211,284 + +2.0
211,285 - -0.6
211,285 - +0.6
211,310 + +0.1
211,310 + -0.3
211,310 + -1.0
211,311 - -0.3
211,311 - +0.1
211,311 - +0.1
211,311 - +0.4
211,311 - -0.6
211,443 + -0.2
211,786 + PfGW456L13_187 0.19 +0.1
211,786 + PfGW456L13_187 0.19 -0.6
211,786 + PfGW456L13_187 0.19 -1.8
211,786 + PfGW456L13_187 0.19 -0.1
211,786 + PfGW456L13_187 0.19 -0.4
211,787 - PfGW456L13_187 0.19 +0.6
211,787 - PfGW456L13_187 0.19 +0.8
211,787 - PfGW456L13_187 0.19 -0.1
211,787 - PfGW456L13_187 0.19 +0.6
211,787 - PfGW456L13_187 0.19 -0.5
211,787 - PfGW456L13_187 0.19 +0.2
211,788 + PfGW456L13_187 0.19 -0.0
211,788 + PfGW456L13_187 0.19 +0.3
211,788 + PfGW456L13_187 0.19 -0.0
211,788 + PfGW456L13_187 0.19 -0.0
211,788 + PfGW456L13_187 0.19 -0.1
211,789 - PfGW456L13_187 0.19 +0.1
211,789 - PfGW456L13_187 0.19 +3.3
211,789 - PfGW456L13_187 0.19 +0.3
211,789 - PfGW456L13_187 0.19 +0.6
211,789 - PfGW456L13_187 0.19 +0.3
211,789 - PfGW456L13_187 0.19 -0.5
211,789 - PfGW456L13_187 0.19 -0.3
211,789 - PfGW456L13_187 0.19 +1.2
211,789 - PfGW456L13_187 0.19 +1.2
211,789 - PfGW456L13_187 0.19 +1.2
211,789 - PfGW456L13_187 0.19 +0.5
211,789 - PfGW456L13_187 0.19 +0.5
211,854 + PfGW456L13_187 0.22 -0.6
211,854 + PfGW456L13_187 0.22 -0.3
211,855 - PfGW456L13_187 0.22 -0.5
211,855 - PfGW456L13_187 0.22 +0.0
211,855 - PfGW456L13_187 0.22 +1.5
211,855 - PfGW456L13_187 0.22 +1.5
211,920 + PfGW456L13_187 0.26 -0.9
211,959 + PfGW456L13_187 0.28 -1.1
211,960 - PfGW456L13_187 0.28 +0.2
211,960 - PfGW456L13_187 0.28 +0.7
212,181 + PfGW456L13_187 0.40 +1.3
212,182 - PfGW456L13_187 0.40 +2.9
212,182 - PfGW456L13_187 0.40 +0.4
212,220 + PfGW456L13_187 0.42 -0.6
212,220 + PfGW456L13_187 0.42 -1.3
212,220 + PfGW456L13_187 0.42 -0.6
212,220 + PfGW456L13_187 0.42 +0.2
212,221 - PfGW456L13_187 0.42 +0.5
212,221 - PfGW456L13_187 0.42 +0.5
212,320 - PfGW456L13_187 0.47 +0.3
212,320 - PfGW456L13_187 0.47 -1.5
212,353 - PfGW456L13_187 0.49 +0.2

Or see this region's nucleotide sequence