Strain Fitness in Pseudomonas putida KT2440 around PP_5195

Experiment: Cholinium dihydrogen phosphate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium dihydrogen phosphate 10 vol%
5,925,273	-		PP_5194	0.19	+0.7
5,925,780	+		PP_5194	0.66	-0.4
5,925,889	+		PP_5194	0.76	+1.1
5,925,889	+		PP_5194	0.76	-0.6
5,925,890	-		PP_5194	0.76	+0.7
5,925,891	+		PP_5194	0.77	-0.3
5,925,892	-		PP_5194	0.77	-0.5
5,925,892	-		PP_5194	0.77	+0.8
5,925,892	-		PP_5194	0.77	+0.2
5,925,892	-		PP_5194	0.77	+0.2
5,925,892	-		PP_5194	0.77	-0.4
5,925,892	-		PP_5194	0.77	-1.5
5,925,892	-		PP_5194	0.77	-0.2
5,925,992	-		PP_5194	0.86	+0.6
5,925,992	-		PP_5194	0.86	+0.9
5,926,056	+				+1.7
5,926,115	+				+0.6
5,926,122	+				+0.1
5,926,123	-				-1.3
5,926,123	-				-0.7
5,926,123	-				-0.2
5,926,123	-				-0.2
5,926,123	-				+0.8
5,926,212	+				+0.4
5,926,341	+				-0.8
5,926,418	+				+0.7
5,926,525	+		PP_5195	0.16	-0.8
5,926,525	+		PP_5195	0.16	+2.1
5,926,526	-		PP_5195	0.16	-1.3
5,926,652	-		PP_5195	0.23	-0.3
5,926,676	+		PP_5195	0.25	-0.3
5,926,676	+		PP_5195	0.25	-0.1
5,926,676	+		PP_5195	0.25	-0.3
5,926,677	-		PP_5195	0.25	+0.1
5,926,681	-		PP_5195	0.25	+0.4
5,926,681	-		PP_5195	0.25	-0.4
5,926,798	+		PP_5195	0.32	-0.4
5,926,798	+		PP_5195	0.32	+1.1
5,926,799	-		PP_5195	0.32	-0.6
5,926,915	+		PP_5195	0.40	-0.9
5,926,915	+		PP_5195	0.40	+1.1
5,926,915	+		PP_5195	0.40	+1.0
5,926,916	-		PP_5195	0.40	+0.4
5,926,942	+		PP_5195	0.41	+0.1
5,926,942	+		PP_5195	0.41	+0.3
5,926,942	+		PP_5195	0.41	-0.1
5,926,943	-		PP_5195	0.41	-0.0
5,926,943	-		PP_5195	0.41	-0.1
5,926,943	-		PP_5195	0.41	-0.1
5,926,943	-		PP_5195	0.41	-1.0
5,927,078	-		PP_5195	0.50	-0.9
5,927,143	+		PP_5195	0.54	+1.5
5,927,143	+		PP_5195	0.54	+0.5
5,927,215	+		PP_5195	0.58	+0.1
5,927,227	+		PP_5195	0.59	-1.4
5,927,227	+		PP_5195	0.59	+0.1
5,927,227	+		PP_5195	0.59	+0.6
5,927,228	-		PP_5195	0.59	-0.8
5,927,228	-		PP_5195	0.59	+0.4
5,927,340	+		PP_5195	0.66	-0.6
5,927,340	+		PP_5195	0.66	-0.6
5,927,382	+		PP_5195	0.68	+0.2
5,927,383	-		PP_5195	0.68	+0.7
5,927,443	+		PP_5195	0.72	-0.3
5,927,444	-		PP_5195	0.72	+0.8
5,927,444	-		PP_5195	0.72	-0.2
5,927,444	-		PP_5195	0.72	+0.1
5,927,444	-		PP_5195	0.72	+0.9
5,927,444	-		PP_5195	0.72	-0.6
5,927,449	+		PP_5195	0.73	+0.3
5,927,449	+		PP_5195	0.73	+0.0
5,927,449	+		PP_5195	0.73	-0.5
5,927,449	+		PP_5195	0.73	-0.5
5,927,449	+		PP_5195	0.73	-0.5
5,927,450	-		PP_5195	0.73	+0.1
5,927,450	-		PP_5195	0.73	+1.2
5,927,455	+		PP_5195	0.73	-0.6
5,927,455	+		PP_5195	0.73	-1.1
5,927,455	+		PP_5195	0.73	+1.7
5,927,456	-		PP_5195	0.73	-0.1
5,927,596	+		PP_5195	0.82	+0.9
5,927,596	+		PP_5195	0.82	+0.8
5,927,736	-				+1.3
5,927,736	-				-0.2
5,927,866	+				-1.1
5,927,866	+				-1.3
5,927,955	+				+1.0
5,927,987	+				+0.7
5,927,988	-				+0.6
5,927,988	-				+0.5
5,928,048	+				+0.7
5,928,049	-				+0.4
5,928,049	-				+1.0
5,928,049	-				-0.9
5,928,054	+				+0.2
5,928,054	+				-1.3
5,928,200	-		PP_5196	0.15	+0.9
5,928,200	-		PP_5196	0.15	+0.0
5,928,200	-		PP_5196	0.15	-0.1
5,928,387	+		PP_5196	0.34	-1.0
5,928,387	+		PP_5196	0.34	-0.6
5,928,388	-		PP_5196	0.34	+0.2
5,928,390	+		PP_5196	0.34	+0.1
5,928,390	+		PP_5196	0.34	-1.5
5,928,390	+		PP_5196	0.34	+0.6
5,928,391	-		PP_5196	0.34	+0.0
5,928,391	-		PP_5196	0.34	+0.3
5,928,558	+		PP_5196	0.51	+1.2
5,928,558	+		PP_5196	0.51	-0.8
5,928,622	-		PP_5196	0.57	+0.8
5,928,622	-		PP_5196	0.57	-0.9
5,928,622	-		PP_5196	0.57	+0.4
5,928,622	-		PP_5196	0.57	-0.6
5,928,622	-		PP_5196	0.57	+0.4
5,928,660	+		PP_5196	0.61	+0.1
5,928,660	+		PP_5196	0.61	-0.8
5,928,661	-		PP_5196	0.61	+0.4
5,928,661	-		PP_5196	0.61	+0.2
5,928,661	-		PP_5196	0.61	+0.2