Experiment: Cholinium dihydrogen phosphate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5108 and PP_5109 are separated by 111 nucleotides PP_5109 and PP_5110 overlap by 4 nucleotides PP_5110 and PP_5111 overlap by 4 nucleotides
PP_5108: PP_5108 - RNA polymerase factor sigma-32, at 5,827,997 to 5,828,851
_5108
PP_5109: PP_5109 - membrane component of the ABC transporter FtsEX involved in cellular division, at 5,828,963 to 5,829,988
_5109
PP_5110: PP_5110 - cytokinetic ring ABC transporter-like subunit - ATP-binding subunit, at 5,829,985 to 5,830,662
_5110
PP_5111: PP_5111 - Signal Recognition Particle protein translocation receptor GTPase, at 5,830,659 to 5,832,143
_5111
Position (kb) 5828
5829
5830 Strain fitness (log2 ratio) -2
-1
0
1 at 5828.869 kb on - strand at 5828.919 kb on - strand at 5828.919 kb on - strand at 5828.958 kb on - strand at 5829.017 kb on - strand at 5829.017 kb on - strand at 5829.019 kb on - strand at 5829.096 kb on + strand, within PP_5109 at 5829.096 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.187 kb on - strand, within PP_5109 at 5829.187 kb on - strand, within PP_5109 at 5829.201 kb on + strand, within PP_5109 at 5829.201 kb on + strand, within PP_5109 at 5829.201 kb on + strand, within PP_5109 at 5829.222 kb on + strand, within PP_5109 at 5829.223 kb on - strand, within PP_5109 at 5829.266 kb on - strand, within PP_5109 at 5829.305 kb on + strand, within PP_5109 at 5829.306 kb on - strand, within PP_5109 at 5829.309 kb on - strand, within PP_5109 at 5829.591 kb on + strand, within PP_5109 at 5829.591 kb on + strand, within PP_5109 at 5829.592 kb on - strand, within PP_5109 at 5829.592 kb on - strand, within PP_5109 at 5829.675 kb on + strand, within PP_5109 at 5829.973 kb on + strand at 5829.974 kb on - strand at 5829.974 kb on - strand at 5830.088 kb on - strand, within PP_5110 at 5830.283 kb on - strand, within PP_5110
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium dihydrogen phosphate 10 vol% remove 5,828,869 - -1.2 5,828,919 - +0.3 5,828,919 - +0.7 5,828,958 - +0.6 5,829,017 - +0.0 5,829,017 - +0.4 5,829,019 - -0.6 5,829,096 + PP_5109 0.13 +0.0 5,829,096 + PP_5109 0.13 +0.4 5,829,186 + PP_5109 0.22 -0.4 5,829,186 + PP_5109 0.22 +0.4 5,829,186 + PP_5109 0.22 -0.1 5,829,186 + PP_5109 0.22 -1.0 5,829,187 - PP_5109 0.22 -0.1 5,829,187 - PP_5109 0.22 +0.3 5,829,201 + PP_5109 0.23 +0.5 5,829,201 + PP_5109 0.23 +0.2 5,829,201 + PP_5109 0.23 -0.2 5,829,222 + PP_5109 0.25 +0.4 5,829,223 - PP_5109 0.25 +0.8 5,829,266 - PP_5109 0.30 +0.6 5,829,305 + PP_5109 0.33 -0.6 5,829,306 - PP_5109 0.33 +0.5 5,829,309 - PP_5109 0.34 +0.1 5,829,591 + PP_5109 0.61 -0.4 5,829,591 + PP_5109 0.61 +0.3 5,829,592 - PP_5109 0.61 +0.1 5,829,592 - PP_5109 0.61 +0.4 5,829,675 + PP_5109 0.69 -0.9 5,829,973 + +0.3 5,829,974 - -2.0 5,829,974 - +0.6 5,830,088 - PP_5110 0.15 +0.1 5,830,283 - PP_5110 0.44 +0.1
Or see this region's nucleotide sequence