Experiment: Cholinium dihydrogen phosphate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4689 and PP_4690 are separated by 148 nucleotides PP_4690 and PP_4691 overlap by 38 nucleotides PP_4691 and PP_4692 overlap by 1 nucleotides
PP_4689: PP_4689 - Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein, at 5,328,335 to 5,329,219
_4689
PP_4690: PP_4690 - Rieske 2Fe-2S family protein, at 5,329,368 to 5,329,712
_4690
PP_4691: PP_4691 - sugar fermentation stimulation protein A, at 5,329,675 to 5,330,388
_4691
PP_4692: PP_4692 - putative aspartate/tyrosine/aromatic aminotransferase, at 5,330,388 to 5,331,560
_4692
Position (kb) 5329
5330 Strain fitness (log2 ratio) -2
-1
0
1 at 5328.600 kb on + strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.055 kb on - strand, within PP_4689 at 5329.279 kb on - strand at 5329.279 kb on - strand at 5329.279 kb on - strand at 5329.382 kb on + strand at 5329.383 kb on - strand at 5329.383 kb on - strand at 5329.383 kb on - strand at 5329.426 kb on + strand, within PP_4690 at 5329.427 kb on - strand, within PP_4690 at 5329.470 kb on + strand, within PP_4690 at 5329.470 kb on + strand, within PP_4690 at 5329.470 kb on + strand, within PP_4690 at 5329.471 kb on - strand, within PP_4690 at 5329.471 kb on - strand, within PP_4690 at 5329.471 kb on - strand, within PP_4690 at 5329.476 kb on + strand, within PP_4690 at 5329.716 kb on + strand at 5329.743 kb on - strand at 5329.853 kb on + strand, within PP_4691 at 5329.853 kb on + strand, within PP_4691 at 5329.854 kb on - strand, within PP_4691 at 5329.994 kb on + strand, within PP_4691 at 5329.994 kb on + strand, within PP_4691 at 5329.994 kb on + strand, within PP_4691 at 5329.995 kb on - strand, within PP_4691 at 5329.995 kb on - strand, within PP_4691 at 5330.052 kb on - strand, within PP_4691 at 5330.278 kb on - strand, within PP_4691 at 5330.293 kb on - strand, within PP_4691 at 5330.342 kb on + strand at 5330.342 kb on + strand at 5330.342 kb on + strand at 5330.420 kb on + strand at 5330.420 kb on + strand at 5330.462 kb on - strand at 5330.462 kb on - strand at 5330.593 kb on + strand, within PP_4692 at 5330.599 kb on + strand, within PP_4692 at 5330.599 kb on + strand, within PP_4692 at 5330.600 kb on - strand, within PP_4692
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium dihydrogen phosphate 10 vol% remove 5,328,600 + PP_4689 0.30 +0.4 5,328,601 - PP_4689 0.30 -0.0 5,328,601 - PP_4689 0.30 -0.4 5,328,601 - PP_4689 0.30 -0.6 5,328,601 - PP_4689 0.30 +0.4 5,329,054 + PP_4689 0.81 -1.8 5,329,054 + PP_4689 0.81 -0.7 5,329,054 + PP_4689 0.81 +0.5 5,329,054 + PP_4689 0.81 +0.2 5,329,054 + PP_4689 0.81 -0.6 5,329,055 - PP_4689 0.81 -0.4 5,329,279 - +0.8 5,329,279 - +1.1 5,329,279 - -0.3 5,329,382 + +0.4 5,329,383 - -0.4 5,329,383 - +1.0 5,329,383 - +0.7 5,329,426 + PP_4690 0.17 +0.6 5,329,427 - PP_4690 0.17 -0.8 5,329,470 + PP_4690 0.30 -1.0 5,329,470 + PP_4690 0.30 -0.4 5,329,470 + PP_4690 0.30 -0.3 5,329,471 - PP_4690 0.30 -0.3 5,329,471 - PP_4690 0.30 +0.5 5,329,471 - PP_4690 0.30 +0.2 5,329,476 + PP_4690 0.31 +0.0 5,329,716 + +0.1 5,329,743 - -0.4 5,329,853 + PP_4691 0.25 +0.4 5,329,853 + PP_4691 0.25 -1.1 5,329,854 - PP_4691 0.25 -0.2 5,329,994 + PP_4691 0.45 -0.1 5,329,994 + PP_4691 0.45 +1.0 5,329,994 + PP_4691 0.45 -1.0 5,329,995 - PP_4691 0.45 -0.0 5,329,995 - PP_4691 0.45 +0.9 5,330,052 - PP_4691 0.53 +0.6 5,330,278 - PP_4691 0.84 -0.4 5,330,293 - PP_4691 0.87 -0.7 5,330,342 + +0.7 5,330,342 + +1.4 5,330,342 + -0.8 5,330,420 + +0.5 5,330,420 + -0.5 5,330,462 - -0.3 5,330,462 - +0.2 5,330,593 + PP_4692 0.17 +0.3 5,330,599 + PP_4692 0.18 -0.1 5,330,599 + PP_4692 0.18 +0.2 5,330,600 - PP_4692 0.18 -0.1
Or see this region's nucleotide sequence