Strain Fitness in Pseudomonas putida KT2440 around PP_4622

Experiment: Cholinium dihydrogen phosphate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium dihydrogen phosphate 10 vol%
5,243,664	+		PP_4621	0.37	-0.3
5,243,664	+		PP_4621	0.37	-0.6
5,243,664	+		PP_4621	0.37	-0.5
5,243,665	-		PP_4621	0.37	-0.1
5,243,665	-		PP_4621	0.37	+0.4
5,243,670	+		PP_4621	0.38	+0.2
5,243,670	+		PP_4621	0.38	-1.0
5,243,756	+		PP_4621	0.44	-1.8
5,243,788	-		PP_4621	0.47	-0.4
5,243,788	-		PP_4621	0.47	-1.2
5,243,893	-		PP_4621	0.55	+1.3
5,244,082	-		PP_4621	0.69	-0.0
5,244,082	-		PP_4621	0.69	-0.0
5,244,087	+		PP_4621	0.70	+0.2
5,244,087	+		PP_4621	0.70	+0.3
5,244,087	+		PP_4621	0.70	-0.2
5,244,087	+		PP_4621	0.70	+0.3
5,244,088	-		PP_4621	0.70	-0.0
5,244,088	-		PP_4621	0.70	+0.3
5,244,088	-		PP_4621	0.70	+0.4
5,244,088	-		PP_4621	0.70	+0.2
5,244,088	-		PP_4621	0.70	+0.9
5,244,088	-		PP_4621	0.70	-0.1
5,244,088	-		PP_4621	0.70	+0.3
5,244,088	-		PP_4621	0.70	-0.5
5,244,289	-		PP_4621	0.85	+1.2
5,244,298	+		PP_4621	0.86	+0.5
5,244,355	-				+0.0
5,244,363	+				+0.2
5,244,529	+				-0.3
5,244,529	+				-0.3
5,244,556	+				-0.4
5,244,556	+				+0.2
5,244,556	+				-0.5
5,244,556	+				-0.7
5,244,557	-				-0.3
5,244,557	-				+1.1
5,244,557	-				-0.6
5,244,557	-				-0.1
5,244,557	-				+0.3
5,244,558	+				-0.0
5,244,703	+		PP_4622	0.13	-0.1
5,244,753	+		PP_4622	0.19	-0.4
5,244,964	+		PP_4622	0.44	+0.4
5,244,965	-		PP_4622	0.44	-0.2
5,244,965	-		PP_4622	0.44	-0.2
5,244,965	-		PP_4622	0.44	-0.3
5,245,062	+		PP_4622	0.56	+0.2
5,245,135	-		PP_4622	0.65	-0.4
5,245,391	+				+0.7
5,245,392	-				-0.9
5,245,440	+				-0.5
5,245,477	-				+0.6
5,245,477	-				-0.5
5,245,554	+				-0.4
5,245,555	-				-0.5
5,245,555	-				-0.4
5,245,555	-				-1.3
5,245,758	-		PP_4623	0.12	-0.6
5,245,789	+		PP_4623	0.13	-0.5
5,245,843	+		PP_4623	0.15	+0.5
5,245,843	+		PP_4623	0.15	-0.8
5,245,843	+		PP_4623	0.15	-0.2
5,245,843	+		PP_4623	0.15	-0.5
5,245,843	+		PP_4623	0.15	-0.1
5,245,844	-		PP_4623	0.15	+0.1
5,245,844	-		PP_4623	0.15	-0.5
5,245,844	-		PP_4623	0.15	+1.7
5,245,893	-		PP_4623	0.16	-0.1
5,246,025	+		PP_4623	0.20	-0.8
5,246,110	-		PP_4623	0.23	+1.3
5,246,110	-		PP_4623	0.23	+1.0
5,246,154	+		PP_4623	0.24	+0.1
5,246,154	+		PP_4623	0.24	+0.3
5,246,155	-		PP_4623	0.24	+0.4
5,246,358	+		PP_4623	0.30	-0.0
5,246,359	-		PP_4623	0.30	-0.8
5,246,381	+		PP_4623	0.31	+0.1
5,246,382	-		PP_4623	0.31	+1.1
5,246,407	-		PP_4623	0.32	+0.4