Strain Fitness in Pseudomonas putida KT2440 around PP_4575

Experiment: Cholinium dihydrogen phosphate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium dihydrogen phosphate 10 vol%
5,193,915	+		PP_4574	0.20	-0.3
5,194,009	+		PP_4574	0.28	+0.1
5,194,010	-		PP_4574	0.28	-0.2
5,194,478	+		PP_4574	0.68	+0.3
5,194,481	+		PP_4574	0.68	+0.4
5,194,482	-		PP_4574	0.68	+0.4
5,194,482	-		PP_4574	0.68	-1.4
5,194,482	-		PP_4574	0.68	-0.8
5,194,482	-		PP_4574	0.68	-0.5
5,194,482	-		PP_4574	0.68	-0.0
5,194,484	+		PP_4574	0.68	+0.5
5,194,484	+		PP_4574	0.68	+0.6
5,194,485	-		PP_4574	0.68	-0.7
5,194,485	-		PP_4574	0.68	-0.1
5,194,503	-		PP_4574	0.70	-0.2
5,194,503	-				+0.4
5,194,575	-		PP_4574	0.76	-1.1
5,194,575	-		PP_4574	0.76	+0.2
5,194,586	+		PP_4574	0.77	-0.1
5,194,586	+		PP_4574	0.77	+0.2
5,194,586	+		PP_4574	0.77	-0.2
5,194,587	-		PP_4574	0.77	+0.8
5,194,757	+				-0.1
5,194,757	+				+0.0
5,194,758	-				+0.7
5,194,758	-				+0.7
5,194,758	-				-0.0
5,194,805	+				+1.6
5,194,805	+				-0.1
5,194,805	+				-0.2
5,194,805	+				+0.0
5,194,806	-				+0.5
5,194,806	-				+0.7
5,194,806	-				+0.1
5,194,845	-				-0.5
5,194,912	+				+0.1
5,194,930	+				-0.4
5,194,930	+				+0.1
5,195,112	+		PP_4575	0.22	-0.1
5,195,112	+		PP_4575	0.22	+1.4
5,195,159	-		PP_4575	0.27	+0.9
5,195,159	-		PP_4575	0.27	+0.0
5,195,159	-		PP_4575	0.27	-0.3
5,195,427	+		PP_4575	0.56	+0.3
5,195,428	-		PP_4575	0.56	-0.3
5,195,428	-		PP_4575	0.56	-1.2
5,195,488	+		PP_4575	0.63	+0.5
5,195,998	-		PP_4576	0.25	-0.8
5,196,022	+		PP_4576	0.29	-0.2
5,196,235	-		PP_4576	0.59	+0.8
5,196,235	-		PP_4576	0.59	+0.0
5,196,355	+		PP_4576	0.77	-0.5
5,196,355	+		PP_4576	0.77	+0.4
5,196,355	+				+1.0
5,196,355	+		PP_4576	0.77	+0.4
5,196,356	-		PP_4576	0.77	+0.4
5,196,356	-		PP_4576	0.77	+0.0
5,196,356	-		PP_4576	0.77	-0.4
5,196,358	+		PP_4576	0.77	+0.0
5,196,358	+		PP_4576	0.77	+0.9
5,196,358	+		PP_4576	0.77	-1.1
5,196,358	+		PP_4576	0.77	-0.9
5,196,358	+		PP_4576	0.77	+0.0
5,196,358	+		PP_4576	0.77	-0.3
5,196,358	+		PP_4576	0.77	-0.8
5,196,359	-		PP_4576	0.77	+0.7
5,196,359	-		PP_4576	0.77	-0.6
5,196,361	-		PP_4576	0.78	-0.6
5,196,361	-		PP_4576	0.78	+0.1
5,196,361	-		PP_4576	0.78	+0.4
5,196,361	-		PP_4576	0.78	-0.3
5,196,361	-		PP_4576	0.78	-0.7
5,196,361	-		PP_4576	0.78	-1.9
5,196,447	+				-0.1
5,196,468	-				+0.8
5,196,468	-				+0.8
5,196,740	+		PP_4577	0.29	+1.0
5,196,740	+		PP_4577	0.29	+0.2
5,196,740	+		PP_4577	0.29	+1.2
5,196,741	-		PP_4577	0.30	-0.1