Experiment: Cholinium dihydrogen phosphate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2161 and PP_2162 are separated by 122 nucleotides PP_2162 and PP_2163 are separated by 201 nucleotides PP_2163 and PP_2164 are separated by 34 nucleotides PP_2164 and PP_2165 are separated by 270 nucleotides
PP_2161: PP_2161 - conserved protein of unknown function, at 2,467,973 to 2,468,236
_2161
PP_2162: PP_2162 - putative phosphonoacetaldehyde phosphonohydrolase-related protein, at 2,468,359 to 2,468,922
_2162
PP_2163: PP_2163 - VacJ lipoprotein, at 2,469,124 to 2,469,831
_2163
PP_2164: PP_2164 - conserved protein of unknown function, at 2,469,866 to 2,470,165
_2164
PP_2165: PP_2165 - Response regulator, at 2,470,436 to 2,471,617
_2165
Position (kb)
2469
2470 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2468.175 kb on - strand, within PP_2161 at 2468.312 kb on + strand at 2468.357 kb on + strand at 2468.358 kb on - strand at 2468.358 kb on - strand at 2468.358 kb on - strand at 2468.623 kb on + strand, within PP_2162 at 2468.894 kb on - strand at 2468.951 kb on + strand at 2469.027 kb on + strand at 2469.027 kb on + strand at 2469.027 kb on + strand at 2469.028 kb on - strand at 2469.055 kb on + strand at 2469.056 kb on - strand at 2469.056 kb on - strand at 2469.056 kb on - strand at 2469.058 kb on - strand at 2469.058 kb on - strand at 2469.071 kb on + strand at 2469.123 kb on + strand at 2469.123 kb on + strand at 2469.123 kb on + strand at 2469.123 kb on + strand at 2469.123 kb on + strand at 2469.124 kb on - strand at 2469.124 kb on - strand at 2469.124 kb on - strand at 2469.124 kb on - strand at 2469.124 kb on - strand at 2469.130 kb on - strand at 2469.286 kb on + strand, within PP_2163 at 2469.286 kb on + strand, within PP_2163 at 2469.286 kb on + strand, within PP_2163 at 2469.286 kb on + strand, within PP_2163 at 2469.286 kb on + strand, within PP_2163 at 2469.286 kb on + strand, within PP_2163 at 2469.287 kb on - strand, within PP_2163 at 2469.287 kb on - strand, within PP_2163 at 2469.287 kb on - strand, within PP_2163 at 2469.634 kb on + strand, within PP_2163 at 2469.634 kb on + strand, within PP_2163 at 2469.634 kb on + strand, within PP_2163 at 2469.634 kb on + strand, within PP_2163 at 2469.634 kb on + strand, within PP_2163 at 2469.635 kb on - strand, within PP_2163 at 2469.635 kb on - strand, within PP_2163 at 2469.647 kb on - strand, within PP_2163 at 2469.653 kb on - strand, within PP_2163 at 2469.670 kb on - strand, within PP_2163 at 2469.754 kb on + strand, within PP_2163 at 2469.754 kb on + strand, within PP_2163 at 2469.754 kb on + strand, within PP_2163 at 2469.755 kb on - strand, within PP_2163 at 2469.775 kb on + strand at 2469.775 kb on + strand at 2469.775 kb on + strand at 2469.987 kb on - strand, within PP_2164 at 2470.142 kb on - strand at 2470.206 kb on - strand at 2470.206 kb on - strand at 2470.208 kb on - strand at 2470.282 kb on + strand at 2470.282 kb on + strand at 2470.296 kb on + strand at 2470.296 kb on + strand at 2470.303 kb on + strand at 2470.303 kb on + strand at 2470.303 kb on + strand at 2470.375 kb on + strand at 2470.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium dihydrogen phosphate 10 vol% remove 2,468,175 - PP_2161 0.77 +0.9 2,468,312 + -0.6 2,468,357 + -0.9 2,468,358 - -0.1 2,468,358 - +0.3 2,468,358 - +0.6 2,468,623 + PP_2162 0.47 -0.0 2,468,894 - +0.7 2,468,951 + +0.3 2,469,027 + +0.1 2,469,027 + -0.1 2,469,027 + +0.0 2,469,028 - -0.6 2,469,055 + -0.0 2,469,056 - -0.5 2,469,056 - -0.0 2,469,056 - +0.4 2,469,058 - -0.2 2,469,058 - +0.6 2,469,071 + +0.2 2,469,123 + -1.0 2,469,123 + +1.9 2,469,123 + +0.5 2,469,123 + +1.6 2,469,123 + -0.2 2,469,124 - -0.6 2,469,124 - -0.4 2,469,124 - +0.0 2,469,124 - -1.3 2,469,124 - +0.2 2,469,130 - -0.7 2,469,286 + PP_2163 0.23 -1.5 2,469,286 + PP_2163 0.23 +0.0 2,469,286 + PP_2163 0.23 -0.3 2,469,286 + PP_2163 0.23 -0.2 2,469,286 + PP_2163 0.23 -0.7 2,469,286 + PP_2163 0.23 -0.2 2,469,287 - PP_2163 0.23 -1.0 2,469,287 - PP_2163 0.23 +1.0 2,469,287 - PP_2163 0.23 -0.2 2,469,634 + PP_2163 0.72 -0.4 2,469,634 + PP_2163 0.72 -0.3 2,469,634 + PP_2163 0.72 +0.3 2,469,634 + PP_2163 0.72 -1.6 2,469,634 + PP_2163 0.72 -0.4 2,469,635 - PP_2163 0.72 +1.3 2,469,635 - PP_2163 0.72 -0.4 2,469,647 - PP_2163 0.74 -0.4 2,469,653 - PP_2163 0.75 -0.4 2,469,670 - PP_2163 0.77 -1.0 2,469,754 + PP_2163 0.89 +0.9 2,469,754 + PP_2163 0.89 -1.3 2,469,754 + PP_2163 0.89 +1.0 2,469,755 - PP_2163 0.89 +0.8 2,469,775 + -2.0 2,469,775 + -0.2 2,469,775 + -0.2 2,469,987 - PP_2164 0.40 -1.0 2,470,142 - -0.0 2,470,206 - +2.0 2,470,206 - +1.0 2,470,208 - -1.3 2,470,282 + +0.6 2,470,282 + +1.1 2,470,296 + +0.3 2,470,296 + -0.5 2,470,303 + +1.7 2,470,303 + +1.0 2,470,303 + -0.5 2,470,375 + -1.4 2,470,375 + -0.4
Or see this region's nucleotide sequence