Strain Fitness in Pseudomonas putida KT2440 around PP_1488

Experiment: Cholinium dihydrogen phosphate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium dihydrogen phosphate 10 vol%
1,690,907	+				+0.2
1,690,908	-				-0.5
1,690,925	+				-0.3
1,690,943	+				-0.2
1,690,944	-				+1.0
1,690,944	-				+0.1
1,691,036	+				-0.5
1,691,036	+				-0.7
1,691,036	+				-0.4
1,691,037	-				+0.4
1,691,239	+		PP_1487	0.27	+0.2
1,691,285	+		PP_1487	0.34	-0.3
1,691,286	-		PP_1487	0.34	-0.6
1,691,286	-		PP_1487	0.34	-0.1
1,691,293	+		PP_1487	0.35	+0.1
1,691,295	+		PP_1487	0.36	-0.0
1,691,399	+		PP_1487	0.51	-0.0
1,691,440	-		PP_1487	0.57	+0.2
1,691,596	+		PP_1487	0.80	-1.1
1,691,596	+		PP_1487	0.80	-0.6
1,691,596	+		PP_1487	0.80	-0.0
1,691,597	-		PP_1487	0.80	-0.3
1,691,732	-				+0.5
1,691,754	+				+0.7
1,691,755	-				+0.7
1,691,755	-				+0.1
1,691,837	-				-0.5
1,691,837	-				+0.1
1,691,856	-				+0.1
1,691,857	+				-0.6
1,691,857	+				+0.0
1,691,857	+				-0.2
1,691,857	+				+0.8
1,691,857	+				+0.4
1,691,988	+				-0.9
1,691,989	-				-0.5
1,692,055	-				-0.8
1,692,055	-				-0.6
1,692,057	+				-0.6
1,692,057	+				-3.1
1,692,058	-				-0.4
1,692,058	-				-1.3
1,692,093	+		PP_1488	0.12	+0.7
1,692,093	+		PP_1488	0.12	+0.3
1,692,093	+		PP_1488	0.12	-0.3
1,692,093	+		PP_1488	0.12	-0.9
1,692,093	+		PP_1488	0.12	+0.1
1,692,094	-		PP_1488	0.12	-0.6
1,692,094	-		PP_1488	0.12	-1.0
1,692,094	-		PP_1488	0.12	+0.6
1,692,094	-		PP_1488	0.12	-1.6
1,692,094	-		PP_1488	0.12	-0.7
1,692,094	-		PP_1488	0.12	-1.3
1,692,192	+		PP_1488	0.18	-0.3
1,692,192	+		PP_1488	0.18	-1.0
1,692,192	+		PP_1488	0.18	-0.4
1,692,193	-		PP_1488	0.18	-0.0
1,692,193	-		PP_1488	0.18	-0.2
1,692,193	-		PP_1488	0.18	+0.4
1,692,193	-		PP_1488	0.18	+0.4
1,692,193	-		PP_1488	0.18	-1.2
1,692,204	+		PP_1488	0.18	-0.7
1,692,204	+		PP_1488	0.18	-0.0
1,692,273	+		PP_1488	0.23	-1.3
1,692,306	+		PP_1488	0.25	-0.8
1,692,322	-		PP_1488	0.26	-0.2
1,692,352	+		PP_1488	0.28	-1.9
1,692,353	-		PP_1488	0.28	+0.2
1,692,356	+		PP_1488	0.28	-0.9
1,692,356	+		PP_1488	0.28	+0.1
1,692,357	-		PP_1488	0.28	-0.5
1,692,357	-		PP_1488	0.28	-1.7
1,692,357	-		PP_1488	0.28	+0.4
1,692,357	-		PP_1488	0.28	-0.8
1,692,357	-		PP_1488	0.28	+0.9
1,692,407	+		PP_1488	0.31	-0.4
1,692,540	-		PP_1488	0.39	-0.5
1,692,561	-		PP_1488	0.40	-0.9
1,693,027	+		PP_1488	0.69	-2.1
1,693,104	+		PP_1488	0.74	-2.1
1,693,105	-		PP_1488	0.74	-0.1
1,693,173	+		PP_1488	0.78	-0.4
1,693,174	-				+1.7
1,693,174	-		PP_1488	0.78	-0.5
1,693,174	-		PP_1488	0.78	-0.4
1,693,174	-		PP_1488	0.78	+0.9
1,693,339	+		PP_1488	0.88	-1.5
1,693,339	+		PP_1488	0.88	-1.0
1,693,340	-				-1.5
1,693,340	-		PP_1488	0.88	+0.0
1,693,340	-		PP_1488	0.88	+0.4
1,693,340	-		PP_1488	0.88	-0.9
1,693,340	-		PP_1488	0.88	-0.1
1,693,458	+				+0.6
1,693,458	+				-0.0
1,693,459	-				+0.7
1,693,459	-				+0.6
1,693,459	-				-0.7
1,693,459	-				-0.2
1,693,587	-		PP_1489	0.11	-0.8
1,693,916	+		PP_1489	0.76	-0.7
1,693,917	-		PP_1489	0.76	-0.4
1,694,007	-				-0.6
1,694,007	-				-0.8
1,694,032	+				+0.7
1,694,032	+				-0.9
1,694,032	+				-0.9
1,694,032	+				+0.8
1,694,032	+				+0.2
1,694,032	+				-0.7
1,694,033	-				-0.6
1,694,033	-				-0.4
1,694,033	-				-1.0
1,694,033	-				-2.2
1,694,073	+				-0.8
1,694,167	+		PP_1490	0.10	-0.4
1,694,167	+		PP_1490	0.10	-0.9
1,694,168	-		PP_1490	0.10	-0.3
1,694,366	-		PP_1490	0.26	-0.8
1,694,366	-		PP_1490	0.26	-0.7
1,694,471	+		PP_1490	0.34	+0.2
1,694,471	+		PP_1490	0.34	-2.4
1,694,471	+		PP_1490	0.34	-1.2
1,694,471	+		PP_1490	0.34	-0.9
1,694,472	-		PP_1490	0.34	-0.5
1,694,472	-		PP_1490	0.34	-0.9
1,694,474	-		PP_1490	0.34	-1.2
1,694,522	-		PP_1490	0.38	-0.3