Strain Fitness in Pseudomonas putida KT2440 around PP_0862

Experiment: Cholinium dihydrogen phosphate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0861 and PP_0862 are separated by 221 nucleotidesPP_0862 and PP_0863 are separated by 3 nucleotidesPP_0863 and PP_0864 are separated by 28 nucleotides PP_0861: PP_0861 - outer membrane ferric siderophore receptor, at 997,827 to 1,000,118 _0861 PP_0862: PP_0862 - PKHD-type hydroxylase PP_0862, at 1,000,340 to 1,001,020 _0862 PP_0863: PP_0863 - conserved protein of unknown function, at 1,001,024 to 1,001,794 _0863 PP_0864: PP_0864 - ornithine decarboxylase, at 1,001,823 to 1,002,986 _0864 Position (kb) 1000 1001 1002Strain fitness (log2 ratio) -2 -1 0 1 2at 999.355 kb on + strand, within PP_0861at 999.358 kb on + strand, within PP_0861at 999.359 kb on - strand, within PP_0861at 999.359 kb on - strand, within PP_0861at 999.359 kb on - strand, within PP_0861at 999.427 kb on + strand, within PP_0861at 999.427 kb on + strand, within PP_0861at 999.427 kb on + strand, within PP_0861at 999.427 kb on + strand, within PP_0861at 999.427 kb on + strand, within PP_0861at 999.428 kb on - strand, within PP_0861at 999.428 kb on - strand, within PP_0861at 999.428 kb on - strand, within PP_0861at 999.428 kb on - strand, within PP_0861at 999.508 kb on + strand, within PP_0861at 999.509 kb on - strand, within PP_0861at 999.526 kb on + strand, within PP_0861at 999.526 kb on + strand, within PP_0861at 999.597 kb on + strand, within PP_0861at 999.597 kb on + strand, within PP_0861at 999.597 kb on + strand, within PP_0861at 999.598 kb on - strand, within PP_0861at 999.727 kb on + strand, within PP_0861at 999.727 kb on + strand, within PP_0861at 999.727 kb on + strand, within PP_0861at 999.727 kb on + strand, within PP_0861at 999.728 kb on - strand, within PP_0861at 999.731 kb on + strand, within PP_0861at 999.731 kb on + strand, within PP_0861at 999.732 kb on - strand, within PP_0861at 999.732 kb on - strand, within PP_0861at 999.807 kb on - strand, within PP_0861at 999.903 kb on + strandat 999.904 kb on - strandat 999.950 kb on - strandat 1000.034 kb on - strandat 1000.036 kb on - strandat 1000.104 kb on + strandat 1000.104 kb on + strandat 1000.104 kb on + strandat 1000.105 kb on - strandat 1000.105 kb on - strandat 1000.105 kb on - strandat 1000.109 kb on - strandat 1000.109 kb on - strandat 1000.109 kb on - strandat 1000.109 kb on - strandat 1000.140 kb on + strandat 1000.140 kb on + strandat 1000.141 kb on - strandat 1000.234 kb on + strandat 1000.260 kb on + strandat 1000.260 kb on + strandat 1000.261 kb on - strandat 1000.261 kb on - strandat 1000.325 kb on - strandat 1000.442 kb on + strand, within PP_0862at 1000.718 kb on + strand, within PP_0862at 1000.719 kb on - strand, within PP_0862at 1000.751 kb on + strand, within PP_0862at 1000.751 kb on + strand, within PP_0862at 1000.751 kb on + strand, within PP_0862at 1000.752 kb on - strand, within PP_0862at 1000.752 kb on - strand, within PP_0862at 1000.752 kb on - strand, within PP_0862at 1000.752 kb on - strand, within PP_0862at 1000.752 kb on - strand, within PP_0862at 1000.796 kb on + strand, within PP_0862at 1000.796 kb on + strand, within PP_0862at 1000.848 kb on - strand, within PP_0862at 1000.985 kb on + strandat 1000.985 kb on + strandat 1000.986 kb on - strandat 1000.986 kb on - strandat 1000.986 kb on - strandat 1000.986 kb on - strandat 1000.990 kb on + strandat 1000.990 kb on + strandat 1000.991 kb on - strandat 1000.991 kb on - strandat 1001.367 kb on + strand, within PP_0863at 1001.367 kb on + strand, within PP_0863at 1001.368 kb on - strand, within PP_0863at 1001.368 kb on - strand, within PP_0863at 1001.368 kb on - strand, within PP_0863at 1001.368 kb on - strandat 1001.368 kb on - strand, within PP_0863at 1001.368 kb on - strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.369 kb on + strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.370 kb on - strand, within PP_0863at 1001.371 kb on + strand, within PP_0863at 1001.371 kb on + strand, within PP_0863at 1001.439 kb on - strand, within PP_0863at 1001.484 kb on - strand, within PP_0863at 1001.484 kb on - strand, within PP_0863at 1001.484 kb on - strand, within PP_0863at 1001.492 kb on + strand, within PP_0863at 1001.493 kb on - strand, within PP_0863at 1001.777 kb on - strandat 1001.824 kb on + strandat 1001.824 kb on + strandat 1001.830 kb on + strandat 1001.830 kb on + strandat 1001.830 kb on + strandat 1001.830 kb on + strandat 1001.830 kb on + strandat 1001.830 kb on + strandat 1001.831 kb on - strandat 1001.833 kb on + strandat 1001.834 kb on - strandat 1001.875 kb on + strandat 1001.876 kb on - strandat 1001.888 kb on - strandat 1001.908 kb on + strandat 1001.947 kb on + strand, within PP_0864at 1001.947 kb on + strand, within PP_0864at 1001.948 kb on - strand, within PP_0864at 1001.948 kb on - strand, within PP_0864at 1001.953 kb on + strand, within PP_0864at 1001.953 kb on + strand, within PP_0864at 1001.953 kb on + strand, within PP_0864at 1001.953 kb on + strand, within PP_0864at 1001.953 kb on + strand, within PP_0864at 1001.954 kb on - strand, within PP_0864at 1001.954 kb on - strandat 1001.963 kb on - strand, within PP_0864at 1001.963 kb on - strand, within PP_0864

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium dihydrogen phosphate 10 vol%
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999,355 + PP_0861 0.67 -0.4
999,358 + PP_0861 0.67 +0.4
999,359 - PP_0861 0.67 +1.1
999,359 - PP_0861 0.67 -0.2
999,359 - PP_0861 0.67 -0.1
999,427 + PP_0861 0.70 +1.2
999,427 + PP_0861 0.70 +0.6
999,427 + PP_0861 0.70 +0.1
999,427 + PP_0861 0.70 -0.2
999,427 + PP_0861 0.70 -0.3
999,428 - PP_0861 0.70 +0.3
999,428 - PP_0861 0.70 -0.2
999,428 - PP_0861 0.70 +0.6
999,428 - PP_0861 0.70 -0.2
999,508 + PP_0861 0.73 +0.2
999,509 - PP_0861 0.73 +1.0
999,526 + PP_0861 0.74 -0.4
999,526 + PP_0861 0.74 +0.3
999,597 + PP_0861 0.77 +0.5
999,597 + PP_0861 0.77 +0.5
999,597 + PP_0861 0.77 -0.1
999,598 - PP_0861 0.77 +0.9
999,727 + PP_0861 0.83 +0.7
999,727 + PP_0861 0.83 +0.4
999,727 + PP_0861 0.83 +0.1
999,727 + PP_0861 0.83 -0.5
999,728 - PP_0861 0.83 +0.8
999,731 + PP_0861 0.83 -0.7
999,731 + PP_0861 0.83 -0.3
999,732 - PP_0861 0.83 -0.0
999,732 - PP_0861 0.83 -0.1
999,807 - PP_0861 0.86 -1.1
999,903 + +0.2
999,904 - +0.8
999,950 - +0.5
1,000,034 - -0.1
1,000,036 - +0.4
1,000,104 + +0.2
1,000,104 + +0.8
1,000,104 + -1.0
1,000,105 - +0.1
1,000,105 - -0.5
1,000,105 - +0.5
1,000,109 - +1.5
1,000,109 - -0.2
1,000,109 - -0.0
1,000,109 - -0.0
1,000,140 + +0.4
1,000,140 + -0.4
1,000,141 - -0.2
1,000,234 + +0.8
1,000,260 + +0.5
1,000,260 + -0.7
1,000,261 - +0.2
1,000,261 - +1.5
1,000,325 - -0.7
1,000,442 + PP_0862 0.15 -0.3
1,000,718 + PP_0862 0.56 -1.7
1,000,719 - PP_0862 0.56 -0.6
1,000,751 + PP_0862 0.60 -0.9
1,000,751 + PP_0862 0.60 +0.2
1,000,751 + PP_0862 0.60 -0.2
1,000,752 - PP_0862 0.60 +0.5
1,000,752 - PP_0862 0.60 -0.1
1,000,752 - PP_0862 0.60 +0.2
1,000,752 - PP_0862 0.60 +0.4
1,000,752 - PP_0862 0.60 +0.2
1,000,796 + PP_0862 0.67 -0.2
1,000,796 + PP_0862 0.67 -0.1
1,000,848 - PP_0862 0.75 -0.0
1,000,985 + -0.2
1,000,985 + +1.0
1,000,986 - -0.8
1,000,986 - +0.8
1,000,986 - -0.0
1,000,986 - +0.3
1,000,990 + +0.3
1,000,990 + +0.1
1,000,991 - -0.4
1,000,991 - -0.5
1,001,367 + PP_0863 0.44 -1.1
1,001,367 + PP_0863 0.44 +0.6
1,001,368 - PP_0863 0.45 -0.2
1,001,368 - PP_0863 0.45 +0.1
1,001,368 - PP_0863 0.45 +0.4
1,001,368 - -0.1
1,001,368 - PP_0863 0.45 +0.1
1,001,368 - PP_0863 0.45 -1.5
1,001,369 + PP_0863 0.45 -0.9
1,001,369 + PP_0863 0.45 +0.1
1,001,369 + PP_0863 0.45 -0.2
1,001,369 + PP_0863 0.45 -0.1
1,001,369 + PP_0863 0.45 -0.3
1,001,369 + PP_0863 0.45 -0.4
1,001,369 + PP_0863 0.45 -0.7
1,001,369 + PP_0863 0.45 +0.3
1,001,369 + PP_0863 0.45 +0.2
1,001,369 + PP_0863 0.45 -0.0
1,001,370 - PP_0863 0.45 -0.6
1,001,370 - PP_0863 0.45 -0.4
1,001,370 - PP_0863 0.45 +0.5
1,001,370 - PP_0863 0.45 +1.5
1,001,370 - PP_0863 0.45 -0.0
1,001,370 - PP_0863 0.45 -0.2
1,001,370 - PP_0863 0.45 -0.1
1,001,370 - PP_0863 0.45 -1.5
1,001,371 + PP_0863 0.45 +1.2
1,001,371 + PP_0863 0.45 +0.8
1,001,439 - PP_0863 0.54 -0.8
1,001,484 - PP_0863 0.60 +0.2
1,001,484 - PP_0863 0.60 -0.0
1,001,484 - PP_0863 0.60 -0.6
1,001,492 + PP_0863 0.61 -0.1
1,001,493 - PP_0863 0.61 +0.6
1,001,777 - +1.0
1,001,824 + -0.2
1,001,824 + +0.3
1,001,830 + +0.3
1,001,830 + -0.0
1,001,830 + -0.9
1,001,830 + +0.8
1,001,830 + +0.4
1,001,830 + -0.4
1,001,831 - -1.6
1,001,833 + -0.7
1,001,834 - +1.5
1,001,875 + +0.0
1,001,876 - -0.3
1,001,888 - +1.5
1,001,908 + +1.0
1,001,947 + PP_0864 0.11 +0.7
1,001,947 + PP_0864 0.11 -0.5
1,001,948 - PP_0864 0.11 -0.2
1,001,948 - PP_0864 0.11 +0.6
1,001,953 + PP_0864 0.11 -2.0
1,001,953 + PP_0864 0.11 +1.1
1,001,953 + PP_0864 0.11 +0.4
1,001,953 + PP_0864 0.11 -0.3
1,001,953 + PP_0864 0.11 +0.2
1,001,954 - PP_0864 0.11 -1.2
1,001,954 - +1.5
1,001,963 - PP_0864 0.12 -1.9
1,001,963 - PP_0864 0.12 +2.1

Or see this region's nucleotide sequence