Strain Fitness in Pseudomonas putida KT2440 around PP_0267

Experiment: Cholinium dihydrogen phosphate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0266 and PP_0267 are separated by 457 nucleotidesPP_0267 and PP_0268 are separated by 474 nucleotides PP_0266: PP_0266 - Agmatine deiminase, at 320,607 to 321,713 _0266 PP_0267: PP_0267 - putative Outer membrane ferric siderophore receptor, at 322,171 to 324,240 _0267 PP_0268: PP_0268 - outer-membrane porin D, at 324,715 to 326,034 _0268 Position (kb) 322 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 321.214 kb on + strand, within PP_0266at 321.214 kb on + strand, within PP_0266at 321.215 kb on - strand, within PP_0266at 321.234 kb on + strand, within PP_0266at 321.234 kb on + strand, within PP_0266at 321.235 kb on - strand, within PP_0266at 321.276 kb on + strand, within PP_0266at 321.276 kb on + strand, within PP_0266at 321.299 kb on - strand, within PP_0266at 321.299 kb on - strand, within PP_0266at 321.299 kb on - strand, within PP_0266at 321.334 kb on - strand, within PP_0266at 321.334 kb on - strand, within PP_0266at 321.334 kb on - strand, within PP_0266at 321.334 kb on - strand, within PP_0266at 321.516 kb on + strand, within PP_0266at 321.516 kb on + strand, within PP_0266at 321.516 kb on + strand, within PP_0266at 321.516 kb on + strand, within PP_0266at 321.516 kb on + strand, within PP_0266at 321.517 kb on - strand, within PP_0266at 321.517 kb on - strand, within PP_0266at 321.517 kb on - strand, within PP_0266at 321.790 kb on + strandat 321.818 kb on - strandat 321.818 kb on - strandat 321.860 kb on + strandat 321.860 kb on + strandat 321.860 kb on + strandat 321.868 kb on + strandat 321.868 kb on + strandat 321.895 kb on + strandat 321.896 kb on - strandat 322.166 kb on + strandat 322.181 kb on + strandat 322.181 kb on + strandat 322.181 kb on + strandat 322.182 kb on - strandat 322.182 kb on - strandat 322.250 kb on + strandat 322.250 kb on + strandat 322.250 kb on + strandat 322.250 kb on + strandat 322.251 kb on - strandat 322.251 kb on - strandat 322.251 kb on - strandat 322.253 kb on + strandat 322.253 kb on + strandat 322.253 kb on + strandat 322.254 kb on - strandat 322.254 kb on - strandat 322.338 kb on - strandat 322.338 kb on - strandat 322.345 kb on + strandat 322.345 kb on + strandat 322.346 kb on - strandat 322.346 kb on - strandat 322.346 kb on - strandat 322.348 kb on + strandat 322.348 kb on + strandat 322.348 kb on + strandat 322.348 kb on + strandat 322.349 kb on - strandat 322.410 kb on - strand, within PP_0267at 322.540 kb on + strand, within PP_0267at 322.541 kb on - strand, within PP_0267at 322.541 kb on - strand, within PP_0267at 322.541 kb on - strand, within PP_0267at 322.541 kb on - strand, within PP_0267at 322.541 kb on - strand, within PP_0267at 322.655 kb on + strand, within PP_0267at 322.656 kb on - strand, within PP_0267at 322.670 kb on + strand, within PP_0267at 322.670 kb on + strand, within PP_0267at 322.670 kb on + strand, within PP_0267at 322.724 kb on - strand, within PP_0267at 322.758 kb on + strand, within PP_0267at 322.759 kb on - strand, within PP_0267at 322.838 kb on + strand, within PP_0267at 322.839 kb on - strand, within PP_0267at 322.839 kb on - strand, within PP_0267at 322.866 kb on - strand, within PP_0267at 323.064 kb on + strand, within PP_0267at 323.065 kb on - strand, within PP_0267at 323.065 kb on - strand, within PP_0267at 323.123 kb on + strand, within PP_0267at 323.123 kb on + strand, within PP_0267at 323.123 kb on + strand, within PP_0267at 323.124 kb on - strand, within PP_0267at 323.124 kb on - strand, within PP_0267at 323.125 kb on + strandat 323.125 kb on + strand, within PP_0267at 323.125 kb on + strand, within PP_0267at 323.125 kb on + strand, within PP_0267at 323.126 kb on - strand, within PP_0267at 323.126 kb on - strand, within PP_0267at 323.126 kb on - strand, within PP_0267at 323.227 kb on + strand, within PP_0267at 323.228 kb on - strand, within PP_0267at 323.274 kb on + strand, within PP_0267at 323.274 kb on + strand, within PP_0267at 323.274 kb on + strand, within PP_0267at 323.275 kb on - strand, within PP_0267at 323.275 kb on - strand, within PP_0267at 323.291 kb on + strand, within PP_0267at 323.303 kb on + strand, within PP_0267at 323.303 kb on + strand, within PP_0267at 323.303 kb on + strand, within PP_0267at 323.303 kb on + strand, within PP_0267at 323.303 kb on + strand, within PP_0267at 323.303 kb on + strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.304 kb on - strand, within PP_0267at 323.379 kb on - strand, within PP_0267at 323.420 kb on + strand, within PP_0267at 323.420 kb on + strand, within PP_0267at 323.420 kb on + strand, within PP_0267at 323.421 kb on - strand, within PP_0267at 323.421 kb on - strand, within PP_0267at 323.438 kb on + strand, within PP_0267at 323.438 kb on + strand, within PP_0267at 323.439 kb on - strand, within PP_0267at 323.511 kb on - strand, within PP_0267at 323.519 kb on + strand, within PP_0267at 323.519 kb on + strand, within PP_0267at 323.520 kb on - strand, within PP_0267at 323.520 kb on - strand, within PP_0267at 323.525 kb on + strand, within PP_0267at 323.687 kb on + strand, within PP_0267at 323.688 kb on - strand, within PP_0267at 323.688 kb on - strand, within PP_0267at 323.798 kb on + strand, within PP_0267at 323.799 kb on - strand, within PP_0267at 323.799 kb on - strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.861 kb on + strand, within PP_0267at 323.862 kb on - strand, within PP_0267at 323.862 kb on - strand, within PP_0267at 323.891 kb on + strand, within PP_0267at 323.891 kb on + strand, within PP_0267at 323.891 kb on + strand, within PP_0267at 323.892 kb on - strand, within PP_0267at 323.892 kb on - strand, within PP_0267at 323.926 kb on + strand, within PP_0267at 323.926 kb on + strand, within PP_0267at 323.927 kb on - strand, within PP_0267at 323.927 kb on - strand, within PP_0267at 324.006 kb on - strand, within PP_0267at 324.053 kb on + strandat 324.054 kb on - strandat 324.054 kb on - strandat 324.233 kb on - strandat 324.312 kb on - strandat 324.317 kb on + strandat 324.332 kb on - strandat 324.335 kb on + strandat 324.336 kb on - strandat 324.336 kb on - strandat 324.350 kb on - strandat 324.427 kb on - strandat 324.427 kb on - strandat 324.427 kb on - strandat 324.459 kb on - strandat 324.491 kb on + strandat 324.492 kb on - strandat 324.492 kb on - strandat 324.525 kb on + strandat 324.570 kb on - strandat 324.570 kb on - strandat 324.570 kb on - strandat 324.635 kb on + strandat 324.635 kb on + strandat 324.647 kb on + strandat 324.647 kb on + strandat 324.676 kb on - strandat 324.696 kb on - strandat 324.702 kb on + strandat 324.703 kb on - strandat 324.844 kb on + strandat 324.845 kb on - strandat 324.953 kb on + strand, within PP_0268at 324.953 kb on + strand, within PP_0268at 324.970 kb on + strand, within PP_0268at 324.971 kb on - strand, within PP_0268at 324.971 kb on - strand, within PP_0268at 325.135 kb on + strand, within PP_0268at 325.136 kb on - strand, within PP_0268

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium dihydrogen phosphate 10 vol%
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321,214 + PP_0266 0.55 -0.5
321,214 + PP_0266 0.55 -0.3
321,215 - PP_0266 0.55 +1.1
321,234 + PP_0266 0.57 -0.7
321,234 + PP_0266 0.57 -1.0
321,235 - PP_0266 0.57 -0.6
321,276 + PP_0266 0.60 -1.1
321,276 + PP_0266 0.60 +0.3
321,299 - PP_0266 0.63 -0.2
321,299 - PP_0266 0.63 +0.0
321,299 - PP_0266 0.63 -2.4
321,334 - PP_0266 0.66 +0.5
321,334 - PP_0266 0.66 +0.2
321,334 - PP_0266 0.66 -0.7
321,334 - PP_0266 0.66 +0.9
321,516 + PP_0266 0.82 -0.8
321,516 + PP_0266 0.82 +0.2
321,516 + PP_0266 0.82 +0.0
321,516 + PP_0266 0.82 -0.6
321,516 + PP_0266 0.82 -0.9
321,517 - PP_0266 0.82 +0.1
321,517 - PP_0266 0.82 +0.0
321,517 - PP_0266 0.82 -0.6
321,790 + -1.1
321,818 - +0.4
321,818 - -0.0
321,860 + -0.5
321,860 + -0.8
321,860 + -0.4
321,868 + +0.1
321,868 + +0.1
321,895 + +0.5
321,896 - -0.7
322,166 + +0.6
322,181 + +2.4
322,181 + +0.2
322,181 + +1.0
322,182 - +0.6
322,182 - +0.4
322,250 + -0.2
322,250 + -0.6
322,250 + -0.0
322,250 + -0.4
322,251 - +0.3
322,251 - -1.4
322,251 - +0.2
322,253 + +0.1
322,253 + +0.7
322,253 + -0.1
322,254 - -0.6
322,254 - -0.2
322,338 - -0.6
322,338 - -1.0
322,345 + +1.5
322,345 + +0.6
322,346 - +0.7
322,346 - -0.3
322,346 - +0.3
322,348 + +0.8
322,348 + +0.0
322,348 + -0.1
322,348 + +0.4
322,349 - +0.2
322,410 - PP_0267 0.12 +0.2
322,540 + PP_0267 0.18 -0.2
322,541 - PP_0267 0.18 -0.5
322,541 - PP_0267 0.18 +0.2
322,541 - PP_0267 0.18 +0.5
322,541 - PP_0267 0.18 -0.4
322,541 - PP_0267 0.18 +0.1
322,655 + PP_0267 0.23 -0.4
322,656 - PP_0267 0.23 -0.9
322,670 + PP_0267 0.24 -0.2
322,670 + PP_0267 0.24 -0.2
322,670 + PP_0267 0.24 -0.1
322,724 - PP_0267 0.27 -1.5
322,758 + PP_0267 0.28 -0.1
322,759 - PP_0267 0.28 -0.4
322,838 + PP_0267 0.32 -0.4
322,839 - PP_0267 0.32 -0.6
322,839 - PP_0267 0.32 -0.3
322,866 - PP_0267 0.34 -0.1
323,064 + PP_0267 0.43 +0.5
323,065 - PP_0267 0.43 -0.2
323,065 - PP_0267 0.43 -0.4
323,123 + PP_0267 0.46 -0.9
323,123 + PP_0267 0.46 -0.6
323,123 + PP_0267 0.46 +0.8
323,124 - PP_0267 0.46 -0.0
323,124 - PP_0267 0.46 +0.2
323,125 + +2.6
323,125 + PP_0267 0.46 -1.5
323,125 + PP_0267 0.46 +1.0
323,125 + PP_0267 0.46 +0.4
323,126 - PP_0267 0.46 -0.4
323,126 - PP_0267 0.46 +0.0
323,126 - PP_0267 0.46 +1.0
323,227 + PP_0267 0.51 -0.3
323,228 - PP_0267 0.51 +0.1
323,274 + PP_0267 0.53 +0.1
323,274 + PP_0267 0.53 +0.8
323,274 + PP_0267 0.53 -0.6
323,275 - PP_0267 0.53 -0.6
323,275 - PP_0267 0.53 +0.4
323,291 + PP_0267 0.54 -0.5
323,303 + PP_0267 0.55 +0.4
323,303 + PP_0267 0.55 -1.0
323,303 + PP_0267 0.55 +0.6
323,303 + PP_0267 0.55 -0.3
323,303 + PP_0267 0.55 -0.1
323,303 + PP_0267 0.55 -0.9
323,304 - PP_0267 0.55 -0.5
323,304 - PP_0267 0.55 +0.6
323,304 - PP_0267 0.55 +0.0
323,304 - PP_0267 0.55 +0.5
323,304 - PP_0267 0.55 -0.0
323,304 - PP_0267 0.55 +0.2
323,304 - PP_0267 0.55 -0.2
323,304 - PP_0267 0.55 +0.9
323,379 - PP_0267 0.58 +0.2
323,420 + PP_0267 0.60 -0.4
323,420 + PP_0267 0.60 -1.1
323,420 + PP_0267 0.60 -0.4
323,421 - PP_0267 0.60 -0.2
323,421 - PP_0267 0.60 -0.8
323,438 + PP_0267 0.61 +0.5
323,438 + PP_0267 0.61 -0.1
323,439 - PP_0267 0.61 -0.3
323,511 - PP_0267 0.65 +0.1
323,519 + PP_0267 0.65 -0.2
323,519 + PP_0267 0.65 +0.2
323,520 - PP_0267 0.65 -0.4
323,520 - PP_0267 0.65 +0.9
323,525 + PP_0267 0.65 +0.1
323,687 + PP_0267 0.73 +0.4
323,688 - PP_0267 0.73 +0.3
323,688 - PP_0267 0.73 +0.5
323,798 + PP_0267 0.79 +0.5
323,799 - PP_0267 0.79 +0.7
323,799 - PP_0267 0.79 +0.6
323,861 + PP_0267 0.82 -0.3
323,861 + PP_0267 0.82 -0.4
323,861 + PP_0267 0.82 +0.1
323,861 + PP_0267 0.82 -0.3
323,862 - PP_0267 0.82 +0.4
323,862 - PP_0267 0.82 +0.2
323,891 + PP_0267 0.83 -0.1
323,891 + PP_0267 0.83 -1.0
323,891 + PP_0267 0.83 -0.5
323,892 - PP_0267 0.83 +0.4
323,892 - PP_0267 0.83 -0.4
323,926 + PP_0267 0.85 +0.2
323,926 + PP_0267 0.85 +0.7
323,927 - PP_0267 0.85 +0.7
323,927 - PP_0267 0.85 +0.1
324,006 - PP_0267 0.89 -0.2
324,053 + -0.6
324,054 - +0.9
324,054 - +0.7
324,233 - +0.4
324,312 - +0.3
324,317 + +0.4
324,332 - +0.0
324,335 + -0.1
324,336 - +1.0
324,336 - +0.2
324,350 - -2.5
324,427 - +0.5
324,427 - +0.6
324,427 - +0.8
324,459 - +0.1
324,491 + +0.0
324,492 - +0.5
324,492 - +0.4
324,525 + -0.3
324,570 - -0.8
324,570 - -0.4
324,570 - +0.9
324,635 + -1.5
324,635 + -0.3
324,647 + -0.6
324,647 + -0.6
324,676 - +0.7
324,696 - +0.1
324,702 + +0.0
324,703 - -0.1
324,844 + +0.8
324,845 - +0.1
324,953 + PP_0268 0.18 -0.1
324,953 + PP_0268 0.18 +0.7
324,970 + PP_0268 0.19 -0.8
324,971 - PP_0268 0.19 +1.6
324,971 - PP_0268 0.19 +0.3
325,135 + PP_0268 0.32 +1.3
325,136 - PP_0268 0.32 -0.5

Or see this region's nucleotide sequence