Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF887

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF886 and GFF887 are separated by 352 nucleotidesGFF887 and GFF888 are separated by 24 nucleotides GFF886 - Major myo-inositol transporter IolT, at 64,666 to 66,102 GFF886 GFF887 - 5-deoxy-glucuronate isomerase (EC 5.3.1.-), at 66,455 to 67,264 GFF887 GFF888 - Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27), at 67,289 to 68,794 GFF888 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.508 kb on - strand, within GFF886at 65.508 kb on - strand, within GFF886at 65.586 kb on - strand, within GFF886at 65.586 kb on - strand, within GFF886at 65.586 kb on - strand, within GFF886at 65.590 kb on - strand, within GFF886at 65.640 kb on + strand, within GFF886at 65.708 kb on - strand, within GFF886at 65.725 kb on + strand, within GFF886at 65.726 kb on - strand, within GFF886at 65.754 kb on + strand, within GFF886at 65.826 kb on - strand, within GFF886at 65.992 kb on - strandat 65.992 kb on - strandat 66.092 kb on + strandat 66.092 kb on + strandat 66.093 kb on - strandat 66.190 kb on - strandat 66.191 kb on + strandat 66.192 kb on - strandat 66.287 kb on - strandat 66.322 kb on - strandat 66.330 kb on + strandat 66.330 kb on + strandat 66.330 kb on + strandat 66.331 kb on - strandat 66.331 kb on - strandat 66.331 kb on - strandat 66.332 kb on + strandat 66.332 kb on + strandat 66.333 kb on - strandat 66.335 kb on - strandat 66.456 kb on + strandat 66.479 kb on - strandat 66.547 kb on - strand, within GFF887at 66.549 kb on + strand, within GFF887at 66.550 kb on - strand, within GFF887at 66.550 kb on - strand, within GFF887at 66.553 kb on + strand, within GFF887at 66.553 kb on + strand, within GFF887at 66.554 kb on - strand, within GFF887at 66.593 kb on - strand, within GFF887at 66.606 kb on - strand, within GFF887at 66.629 kb on - strand, within GFF887at 66.705 kb on + strand, within GFF887at 66.706 kb on - strand, within GFF887at 66.788 kb on - strand, within GFF887at 66.793 kb on - strand, within GFF887at 66.793 kb on - strand, within GFF887at 66.914 kb on + strand, within GFF887at 67.185 kb on + strandat 67.287 kb on + strandat 67.288 kb on - strandat 67.290 kb on + strandat 67.372 kb on - strandat 67.521 kb on + strand, within GFF888at 67.583 kb on - strand, within GFF888at 67.597 kb on - strand, within GFF888at 67.695 kb on + strand, within GFF888at 67.869 kb on - strand, within GFF888at 68.063 kb on + strand, within GFF888at 68.093 kb on - strand, within GFF888at 68.095 kb on - strand, within GFF888at 68.095 kb on - strand, within GFF888at 68.098 kb on + strand, within GFF888at 68.098 kb on + strand, within GFF888at 68.098 kb on + strand, within GFF888at 68.098 kb on + strand, within GFF888at 68.099 kb on - strand, within GFF888at 68.099 kb on - strand, within GFF888at 68.099 kb on - strand, within GFF888at 68.099 kb on - strand, within GFF888at 68.141 kb on + strand, within GFF888at 68.243 kb on - strand, within GFF888

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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65,508 - GFF886 0.59 -0.2
65,508 - GFF886 0.59 -0.1
65,586 - GFF886 0.64 +0.5
65,586 - GFF886 0.64 -0.5
65,586 - GFF886 0.64 -0.1
65,590 - GFF886 0.64 -0.7
65,640 + GFF886 0.68 -0.1
65,708 - GFF886 0.73 +0.0
65,725 + GFF886 0.74 -0.7
65,726 - GFF886 0.74 -0.5
65,754 + GFF886 0.76 +1.0
65,826 - GFF886 0.81 -0.1
65,992 - +0.0
65,992 - +0.1
66,092 + -0.1
66,092 + -0.5
66,093 - -0.2
66,190 - -0.1
66,191 + -0.3
66,192 - +0.2
66,287 - +0.0
66,322 - -0.9
66,330 + -0.1
66,330 + +0.1
66,330 + -0.2
66,331 - -0.1
66,331 - -0.3
66,331 - +0.5
66,332 + +0.4
66,332 + -0.2
66,333 - -0.1
66,335 - -0.0
66,456 + -0.1
66,479 - -0.4
66,547 - GFF887 0.11 +0.2
66,549 + GFF887 0.12 +1.3
66,550 - GFF887 0.12 +0.0
66,550 - GFF887 0.12 -2.3
66,553 + GFF887 0.12 -0.0
66,553 + GFF887 0.12 +1.0
66,554 - GFF887 0.12 -0.4
66,593 - GFF887 0.17 +0.2
66,606 - GFF887 0.19 +0.1
66,629 - GFF887 0.21 -0.2
66,705 + GFF887 0.31 +0.3
66,706 - GFF887 0.31 +0.0
66,788 - GFF887 0.41 +0.4
66,793 - GFF887 0.42 -1.0
66,793 - GFF887 0.42 +0.6
66,914 + GFF887 0.57 +0.5
67,185 + -0.2
67,287 + +0.2
67,288 - +0.0
67,290 + -0.4
67,372 - +0.8
67,521 + GFF888 0.15 +1.0
67,583 - GFF888 0.20 +0.3
67,597 - GFF888 0.20 -0.4
67,695 + GFF888 0.27 +0.2
67,869 - GFF888 0.39 -0.8
68,063 + GFF888 0.51 +0.0
68,093 - GFF888 0.53 -0.3
68,095 - GFF888 0.54 +1.8
68,095 - GFF888 0.54 +0.7
68,098 + GFF888 0.54 +0.4
68,098 + GFF888 0.54 -0.2
68,098 + GFF888 0.54 -0.1
68,098 + GFF888 0.54 +0.8
68,099 - GFF888 0.54 +1.4
68,099 - GFF888 0.54 +0.8
68,099 - GFF888 0.54 +0.1
68,099 - GFF888 0.54 +0.1
68,141 + GFF888 0.57 +0.9
68,243 - GFF888 0.63 +0.2

Or see this region's nucleotide sequence