Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF503

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF502 and GFF503 are separated by 72 nucleotidesGFF503 and GFF504 are separated by 627 nucleotides GFF502 - Inner membrane protein YhjD, at 230,377 to 231,405 GFF502 GFF503 - LysR family transcriptional regulator YhjC, at 231,478 to 232,380 GFF503 GFF504 - Putative regulator, at 233,008 to 233,610 GFF504 Position (kb) 231 232 233Strain fitness (log2 ratio) -1 0 1at 230.547 kb on - strand, within GFF502at 230.812 kb on + strand, within GFF502at 230.847 kb on - strand, within GFF502at 230.988 kb on + strand, within GFF502at 231.009 kb on + strand, within GFF502at 231.039 kb on + strand, within GFF502at 231.061 kb on + strand, within GFF502at 231.061 kb on + strand, within GFF502at 231.168 kb on - strand, within GFF502at 231.436 kb on + strandat 231.436 kb on + strandat 231.436 kb on + strandat 231.437 kb on - strandat 231.444 kb on + strandat 231.446 kb on + strandat 231.446 kb on + strandat 231.514 kb on + strandat 231.520 kb on - strandat 231.670 kb on + strand, within GFF503at 231.804 kb on - strand, within GFF503at 231.866 kb on + strand, within GFF503at 232.000 kb on - strand, within GFF503at 232.000 kb on - strand, within GFF503at 232.000 kb on - strand, within GFF503at 232.086 kb on + strand, within GFF503at 232.087 kb on - strand, within GFF503at 232.087 kb on - strand, within GFF503at 232.091 kb on - strand, within GFF503at 232.203 kb on + strand, within GFF503at 232.450 kb on + strandat 232.620 kb on + strandat 232.620 kb on + strandat 232.621 kb on - strandat 232.621 kb on - strandat 232.625 kb on - strandat 232.632 kb on - strandat 232.766 kb on - strandat 233.238 kb on + strand, within GFF504at 233.241 kb on + strand, within GFF504

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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230,547 - GFF502 0.17 +0.2
230,812 + GFF502 0.42 -0.1
230,847 - GFF502 0.46 +0.4
230,988 + GFF502 0.59 -0.6
231,009 + GFF502 0.61 +0.6
231,039 + GFF502 0.64 +0.0
231,061 + GFF502 0.66 -0.6
231,061 + GFF502 0.66 +0.4
231,168 - GFF502 0.77 +0.1
231,436 + -0.5
231,436 + -0.5
231,436 + -0.0
231,437 - -0.5
231,444 + -0.1
231,446 + +0.8
231,446 + -0.1
231,514 + -0.3
231,520 - +0.0
231,670 + GFF503 0.21 -0.5
231,804 - GFF503 0.36 +0.4
231,866 + GFF503 0.43 +0.3
232,000 - GFF503 0.58 +0.3
232,000 - GFF503 0.58 +0.2
232,000 - GFF503 0.58 +0.3
232,086 + GFF503 0.67 +0.4
232,087 - GFF503 0.67 +0.3
232,087 - GFF503 0.67 +0.9
232,091 - GFF503 0.68 +0.3
232,203 + GFF503 0.80 -0.7
232,450 + +0.0
232,620 + +0.8
232,620 + -0.2
232,621 - -0.0
232,621 - -0.3
232,625 - +0.9
232,632 - -0.0
232,766 - -0.4
233,238 + GFF504 0.38 +0.5
233,241 + GFF504 0.39 -0.2

Or see this region's nucleotide sequence