Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4805

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4801 and GFF4802 are separated by 1 nucleotidesGFF4802 and GFF4803 are separated by 190 nucleotidesGFF4803 and GFF4804 are separated by 69 nucleotidesGFF4804 and GFF4805 overlap by 10 nucleotidesGFF4805 and GFF4806 are separated by 63 nucleotidesGFF4806 and GFF4807 are separated by 4 nucleotides GFF4801 - Alkaline phosphatase isozyme conversion protein precursor (EC 3.4.11.-), at 105,333 to 106,379 GFF4801 GFF4802 - FIG01045727: hypothetical protein, at 106,381 to 106,554 GFF4802 GFF4803 - hypothetical protein, at 106,745 to 106,891 GFF4803 GFF4804 - hypothetical protein, at 106,961 to 107,092 GFF4804 GFF4805 - FIG01046225: hypothetical protein, at 107,083 to 107,202 GFF4805 GFF4806 - FIG01045727: hypothetical protein, at 107,266 to 107,457 GFF4806 GFF4807 - CRISPR associated protein of unknown function, at 107,462 to 108,118 GFF4807 Position (kb) 107 108Strain fitness (log2 ratio) -1 0 1at 106.253 kb on - strand, within GFF4801at 106.321 kb on + strandat 106.322 kb on - strandat 106.322 kb on - strandat 106.322 kb on - strandat 106.322 kb on - strandat 106.381 kb on - strandat 106.399 kb on + strand, within GFF4802at 106.555 kb on + strandat 106.555 kb on + strandat 106.555 kb on + strandat 106.675 kb on + strandat 106.675 kb on + strandat 106.677 kb on + strandat 106.678 kb on - strandat 107.157 kb on - strand, within GFF4805at 107.163 kb on - strand, within GFF4805at 107.212 kb on + strandat 107.212 kb on + strandat 107.213 kb on - strandat 107.324 kb on + strand, within GFF4806at 107.400 kb on + strand, within GFF4806at 108.066 kb on + strandat 108.127 kb on - strandat 108.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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106,253 - GFF4801 0.88 +0.1
106,321 + +1.5
106,322 - +0.3
106,322 - -0.8
106,322 - -0.9
106,322 - +0.3
106,381 - +0.0
106,399 + GFF4802 0.10 -0.0
106,555 + +0.2
106,555 + +0.1
106,555 + +0.6
106,675 + +0.4
106,675 + +0.5
106,677 + -0.2
106,678 - +0.2
107,157 - GFF4805 0.62 +0.3
107,163 - GFF4805 0.67 -0.9
107,212 + -0.8
107,212 + +0.1
107,213 - +0.1
107,324 + GFF4806 0.30 +1.0
107,400 + GFF4806 0.70 +0.3
108,066 + -0.3
108,127 - -0.4
108,127 - -0.6

Or see this region's nucleotide sequence