Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4562

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4560 and GFF4561 are separated by 92 nucleotidesGFF4561 and GFF4562 are separated by 38 nucleotidesGFF4562 and GFF4563 are separated by 217 nucleotidesGFF4563 and GFF4564 overlap by 4 nucleotides GFF4560 - Propionate catabolism operon regulatory protein PrpR, at 344,759 to 346,687 GFF4560 GFF4561 - FIG002095: hypothetical protein, at 346,780 to 347,253 GFF4561 GFF4562 - TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN, at 347,292 to 348,287 GFF4562 GFF4563 - FIG00637867: hypothetical protein, at 348,505 to 349,119 GFF4563 GFF4564 - Putative molecular chaperone, DnaJ family, at 349,116 to 350,549 GFF4564 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1at 346.312 kb on + strand, within GFF4560at 346.312 kb on + strand, within GFF4560at 346.313 kb on - strand, within GFF4560at 346.316 kb on - strand, within GFF4560at 346.316 kb on - strand, within GFF4560at 346.331 kb on + strand, within GFF4560at 346.333 kb on + strand, within GFF4560at 346.333 kb on + strand, within GFF4560at 346.424 kb on - strand, within GFF4560at 346.444 kb on + strand, within GFF4560at 346.525 kb on + strandat 346.526 kb on - strandat 346.526 kb on - strandat 346.638 kb on + strandat 346.639 kb on - strandat 346.671 kb on + strandat 346.743 kb on - strandat 346.745 kb on + strandat 346.745 kb on + strandat 346.801 kb on + strandat 346.824 kb on - strandat 347.110 kb on + strand, within GFF4561at 347.110 kb on + strand, within GFF4561at 347.165 kb on - strand, within GFF4561at 347.251 kb on + strandat 347.252 kb on - strandat 347.294 kb on - strandat 347.294 kb on - strandat 347.374 kb on + strandat 347.389 kb on - strandat 347.389 kb on - strandat 347.419 kb on + strand, within GFF4562at 347.437 kb on + strand, within GFF4562at 347.548 kb on + strand, within GFF4562at 347.591 kb on - strand, within GFF4562at 347.606 kb on - strand, within GFF4562at 347.632 kb on + strand, within GFF4562at 347.636 kb on - strand, within GFF4562at 347.747 kb on + strand, within GFF4562at 347.747 kb on + strand, within GFF4562at 347.747 kb on + strand, within GFF4562at 347.747 kb on + strand, within GFF4562at 347.747 kb on + strand, within GFF4562at 347.748 kb on - strand, within GFF4562at 347.750 kb on - strand, within GFF4562at 347.750 kb on - strand, within GFF4562at 347.784 kb on + strand, within GFF4562at 347.785 kb on - strand, within GFF4562at 347.869 kb on + strand, within GFF4562at 347.929 kb on + strand, within GFF4562at 347.971 kb on - strand, within GFF4562at 348.646 kb on + strand, within GFF4563at 348.670 kb on + strand, within GFF4563at 348.703 kb on + strand, within GFF4563at 348.704 kb on - strand, within GFF4563at 348.871 kb on + strand, within GFF4563at 348.907 kb on + strand, within GFF4563at 348.908 kb on - strand, within GFF4563at 348.908 kb on - strand, within GFF4563at 348.922 kb on + strand, within GFF4563at 348.932 kb on + strand, within GFF4563at 348.951 kb on - strand, within GFF4563at 349.005 kb on + strand, within GFF4563at 349.006 kb on - strand, within GFF4563

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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346,312 + GFF4560 0.81 -0.1
346,312 + GFF4560 0.81 -0.4
346,313 - GFF4560 0.81 +0.1
346,316 - GFF4560 0.81 -0.9
346,316 - GFF4560 0.81 -0.5
346,331 + GFF4560 0.81 -0.2
346,333 + GFF4560 0.82 -1.1
346,333 + GFF4560 0.82 +0.0
346,424 - GFF4560 0.86 -0.4
346,444 + GFF4560 0.87 +0.4
346,525 + +0.5
346,526 - -0.1
346,526 - -0.5
346,638 + +0.5
346,639 - -0.2
346,671 + -1.8
346,743 - -0.2
346,745 + -0.3
346,745 + +0.3
346,801 + +0.0
346,824 - -0.3
347,110 + GFF4561 0.70 -0.5
347,110 + GFF4561 0.70 -0.5
347,165 - GFF4561 0.81 +0.3
347,251 + -0.7
347,252 - +1.0
347,294 - -0.1
347,294 - -1.3
347,374 + +0.6
347,389 - -0.2
347,389 - +0.4
347,419 + GFF4562 0.13 -1.0
347,437 + GFF4562 0.15 +0.7
347,548 + GFF4562 0.26 -0.8
347,591 - GFF4562 0.30 -2.3
347,606 - GFF4562 0.32 +0.1
347,632 + GFF4562 0.34 -0.0
347,636 - GFF4562 0.35 -0.4
347,747 + GFF4562 0.46 -0.3
347,747 + GFF4562 0.46 -2.0
347,747 + GFF4562 0.46 -1.1
347,747 + GFF4562 0.46 -0.8
347,747 + GFF4562 0.46 -0.3
347,748 - GFF4562 0.46 -0.3
347,750 - GFF4562 0.46 +0.8
347,750 - GFF4562 0.46 -0.4
347,784 + GFF4562 0.49 -0.1
347,785 - GFF4562 0.49 -1.6
347,869 + GFF4562 0.58 +0.3
347,929 + GFF4562 0.64 -0.5
347,971 - GFF4562 0.68 -1.1
348,646 + GFF4563 0.23 -0.4
348,670 + GFF4563 0.27 +0.3
348,703 + GFF4563 0.32 +0.4
348,704 - GFF4563 0.32 -0.6
348,871 + GFF4563 0.60 +0.2
348,907 + GFF4563 0.65 -0.6
348,908 - GFF4563 0.66 -0.4
348,908 - GFF4563 0.66 -0.1
348,922 + GFF4563 0.68 -0.7
348,932 + GFF4563 0.69 +0.0
348,951 - GFF4563 0.73 +0.8
349,005 + GFF4563 0.81 -0.1
349,006 - GFF4563 0.81 +0.4

Or see this region's nucleotide sequence