Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4255 and GFF4256 overlap by 1 nucleotides GFF4256 and GFF4257 are separated by 205 nucleotides GFF4257 and GFF4258 are separated by 163 nucleotides
GFF4255 - putative Cytochrome bd2, subunit II, at 40,378 to 41,388
GFF4255
GFF4256 - putative Cytochrome bd2, subunit II, at 41,388 to 41,519
GFF4256
GFF4257 - Transcriptional regulator, AraC family, at 41,725 to 42,729
GFF4257
GFF4258 - Ferrichrome-iron receptor, at 42,893 to 44,983
GFF4258
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1 at 40.888 kb on + strand, within GFF4255 at 40.888 kb on + strand, within GFF4255 at 41.067 kb on - strand, within GFF4255 at 41.071 kb on + strand, within GFF4255 at 41.072 kb on - strand, within GFF4255 at 41.341 kb on + strand at 41.422 kb on + strand, within GFF4256 at 41.672 kb on - strand at 41.851 kb on - strand, within GFF4257 at 41.892 kb on - strand, within GFF4257 at 41.917 kb on - strand, within GFF4257 at 41.917 kb on - strand, within GFF4257 at 41.939 kb on + strand, within GFF4257 at 41.939 kb on + strand, within GFF4257 at 41.940 kb on - strand, within GFF4257 at 41.940 kb on - strand, within GFF4257 at 41.947 kb on + strand, within GFF4257 at 41.948 kb on - strand, within GFF4257 at 41.980 kb on + strand, within GFF4257 at 41.981 kb on - strand, within GFF4257 at 41.981 kb on - strand, within GFF4257 at 41.981 kb on - strand, within GFF4257 at 41.982 kb on + strand, within GFF4257 at 41.982 kb on + strand, within GFF4257 at 41.983 kb on - strand, within GFF4257 at 42.004 kb on - strand, within GFF4257 at 42.142 kb on + strand, within GFF4257 at 42.299 kb on + strand, within GFF4257 at 42.334 kb on + strand, within GFF4257 at 42.521 kb on - strand, within GFF4257 at 42.521 kb on - strand, within GFF4257 at 42.827 kb on + strand at 42.828 kb on - strand at 42.828 kb on - strand at 42.865 kb on + strand at 43.069 kb on + strand at 43.142 kb on + strand, within GFF4258 at 43.178 kb on + strand, within GFF4258 at 43.186 kb on - strand, within GFF4258 at 43.186 kb on - strand, within GFF4258 at 43.207 kb on + strand, within GFF4258 at 43.223 kb on + strand, within GFF4258 at 43.427 kb on - strand, within GFF4258 at 43.585 kb on + strand, within GFF4258 at 43.609 kb on + strand, within GFF4258 at 43.685 kb on - strand, within GFF4258
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 40,888 + GFF4255 0.50 +0.2 40,888 + GFF4255 0.50 +0.2 41,067 - GFF4255 0.68 -0.3 41,071 + GFF4255 0.69 +1.3 41,072 - GFF4255 0.69 +0.8 41,341 + -0.5 41,422 + GFF4256 0.26 +0.4 41,672 - -0.6 41,851 - GFF4257 0.13 -0.4 41,892 - GFF4257 0.17 -1.7 41,917 - GFF4257 0.19 +0.0 41,917 - GFF4257 0.19 +0.0 41,939 + GFF4257 0.21 -0.1 41,939 + GFF4257 0.21 +0.3 41,940 - GFF4257 0.21 -1.3 41,940 - GFF4257 0.21 -0.2 41,947 + GFF4257 0.22 -0.6 41,948 - GFF4257 0.22 -0.5 41,980 + GFF4257 0.25 +0.2 41,981 - GFF4257 0.25 +0.2 41,981 - GFF4257 0.25 -0.4 41,981 - GFF4257 0.25 +0.7 41,982 + GFF4257 0.26 +0.8 41,982 + GFF4257 0.26 -1.2 41,983 - GFF4257 0.26 -0.8 42,004 - GFF4257 0.28 -0.2 42,142 + GFF4257 0.41 -0.4 42,299 + GFF4257 0.57 -0.7 42,334 + GFF4257 0.61 -0.2 42,521 - GFF4257 0.79 -0.5 42,521 - GFF4257 0.79 +1.2 42,827 + +0.4 42,828 - +0.0 42,828 - -1.6 42,865 + -0.0 43,069 + +0.2 43,142 + GFF4258 0.12 -0.3 43,178 + GFF4258 0.14 +0.3 43,186 - GFF4258 0.14 -1.5 43,186 - GFF4258 0.14 -1.1 43,207 + GFF4258 0.15 +0.1 43,223 + GFF4258 0.16 +0.1 43,427 - GFF4258 0.26 +0.3 43,585 + GFF4258 0.33 +0.4 43,609 + GFF4258 0.34 -0.2 43,685 - GFF4258 0.38 +1.3
Or see this region's nucleotide sequence