Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3735

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3733 and GFF3734 are separated by 231 nucleotidesGFF3734 and GFF3735 are separated by 317 nucleotidesGFF3735 and GFF3736 are separated by 90 nucleotidesGFF3736 and GFF3737 are separated by 79 nucleotides GFF3733 - Phage tail fiber protein, at 140 to 931 GFF3733 GFF3734 - Phage tail fibers, at 1,163 to 1,282 GFF3734 GFF3735 - Secreted effector protein, at 1,600 to 3,966 GFF3735 GFF3736 - Phage-related protein, at 4,057 to 4,287 GFF3736 GFF3737 - Phage antitermination protein Q, at 4,367 to 5,284 GFF3737 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 0.803 kb on + strand, within GFF3733at 0.804 kb on - strand, within GFF3733at 0.838 kb on + strand, within GFF3733at 1.106 kb on - strandat 1.167 kb on + strandat 1.574 kb on - strandat 1.574 kb on - strandat 1.574 kb on - strandat 1.919 kb on + strand, within GFF3735at 1.919 kb on + strand, within GFF3735at 1.951 kb on + strand, within GFF3735at 1.951 kb on + strand, within GFF3735at 1.951 kb on + strand, within GFF3735at 1.958 kb on + strand, within GFF3735at 2.104 kb on + strand, within GFF3735at 2.295 kb on + strand, within GFF3735at 2.409 kb on + strand, within GFF3735at 2.410 kb on - strand, within GFF3735at 2.451 kb on - strand, within GFF3735at 2.451 kb on - strand, within GFF3735at 2.454 kb on + strand, within GFF3735at 2.454 kb on + strand, within GFF3735at 2.454 kb on + strand, within GFF3735at 2.455 kb on - strand, within GFF3735at 2.455 kb on - strand, within GFF3735at 2.455 kb on - strand, within GFF3735at 2.455 kb on - strand, within GFF3735at 2.575 kb on - strand, within GFF3735at 2.589 kb on + strand, within GFF3735at 2.589 kb on + strand, within GFF3735at 2.590 kb on - strand, within GFF3735at 2.593 kb on - strand, within GFF3735at 2.645 kb on + strand, within GFF3735at 2.690 kb on + strand, within GFF3735at 2.694 kb on + strand, within GFF3735at 2.888 kb on - strand, within GFF3735at 3.153 kb on + strand, within GFF3735at 3.312 kb on + strand, within GFF3735at 3.313 kb on - strand, within GFF3735at 3.380 kb on + strand, within GFF3735at 3.381 kb on - strand, within GFF3735at 3.394 kb on - strand, within GFF3735at 3.689 kb on + strand, within GFF3735at 3.938 kb on - strandat 4.086 kb on - strand, within GFF3736at 4.341 kb on + strandat 4.341 kb on + strandat 4.657 kb on + strand, within GFF3737at 4.933 kb on - strand, within GFF3737

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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803 + GFF3733 0.84 -2.7
804 - GFF3733 0.84 -1.7
838 + GFF3733 0.88 +0.2
1,106 - -0.5
1,167 + -0.5
1,574 - -1.5
1,574 - -0.5
1,574 - -0.5
1,919 + GFF3735 0.13 -0.7
1,919 + GFF3735 0.13 +0.0
1,951 + GFF3735 0.15 +0.3
1,951 + GFF3735 0.15 +0.1
1,951 + GFF3735 0.15 +1.2
1,958 + GFF3735 0.15 +0.2
2,104 + GFF3735 0.21 +0.1
2,295 + GFF3735 0.29 +0.4
2,409 + GFF3735 0.34 +0.6
2,410 - GFF3735 0.34 +0.7
2,451 - GFF3735 0.36 +0.0
2,451 - GFF3735 0.36 +0.2
2,454 + GFF3735 0.36 -0.3
2,454 + GFF3735 0.36 +0.2
2,454 + GFF3735 0.36 +0.4
2,455 - GFF3735 0.36 -0.9
2,455 - GFF3735 0.36 -0.3
2,455 - GFF3735 0.36 +1.9
2,455 - GFF3735 0.36 +0.5
2,575 - GFF3735 0.41 +0.2
2,589 + GFF3735 0.42 +0.3
2,589 + GFF3735 0.42 -0.1
2,590 - GFF3735 0.42 +0.2
2,593 - GFF3735 0.42 +0.1
2,645 + GFF3735 0.44 -0.0
2,690 + GFF3735 0.46 +0.2
2,694 + GFF3735 0.46 -0.2
2,888 - GFF3735 0.54 +0.0
3,153 + GFF3735 0.66 +0.9
3,312 + GFF3735 0.72 +0.7
3,313 - GFF3735 0.72 +0.6
3,380 + GFF3735 0.75 +0.3
3,381 - GFF3735 0.75 +0.2
3,394 - GFF3735 0.76 +0.5
3,689 + GFF3735 0.88 -0.9
3,938 - +0.1
4,086 - GFF3736 0.13 +0.0
4,341 + +0.2
4,341 + -0.4
4,657 + GFF3737 0.32 -0.0
4,933 - GFF3737 0.62 +0.3

Or see this region's nucleotide sequence