Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3601

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3599 and GFF3600 are separated by 17 nucleotidesGFF3600 and GFF3601 overlap by 4 nucleotidesGFF3601 and GFF3602 overlap by 11 nucleotides GFF3599 - Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ), at 352,390 to 353,079 GFF3599 GFF3600 - FIG029138: Type III secretion protein, at 353,097 to 353,645 GFF3600 GFF3601 - Type III secretion protein SsaK, at 353,642 to 354,316 GFF3601 GFF3602 - Type III secretion cytoplasmic protein (YscL), at 354,306 to 355,298 GFF3602 Position (kb) 353 354 355Strain fitness (log2 ratio) -2 -1 0 1at 352.990 kb on + strand, within GFF3599at 353.467 kb on + strand, within GFF3600at 353.937 kb on + strand, within GFF3601at 354.003 kb on + strand, within GFF3601at 354.053 kb on - strand, within GFF3601at 354.277 kb on - strandat 354.387 kb on - strandat 354.403 kb on + strandat 354.644 kb on + strand, within GFF3602at 354.792 kb on - strand, within GFF3602at 354.850 kb on + strand, within GFF3602at 354.906 kb on - strand, within GFF3602at 354.986 kb on - strand, within GFF3602at 355.203 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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352,990 + GFF3599 0.87 -0.6
353,467 + GFF3600 0.67 -0.1
353,937 + GFF3601 0.44 -0.5
354,003 + GFF3601 0.53 -0.2
354,053 - GFF3601 0.61 -1.0
354,277 - +1.0
354,387 - +0.7
354,403 + +0.8
354,644 + GFF3602 0.34 -0.8
354,792 - GFF3602 0.49 -0.8
354,850 + GFF3602 0.55 -2.1
354,906 - GFF3602 0.60 +0.1
354,986 - GFF3602 0.68 +0.1
355,203 - -0.5

Or see this region's nucleotide sequence