Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3578 and GFF3579 are separated by 6 nucleotides GFF3579 and GFF3580 are separated by 109 nucleotides GFF3580 and GFF3581 are separated by 178 nucleotides GFF3581 and GFF3582 are separated by 30 nucleotides
GFF3578 - COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA, at 336,181 to 337,062
GFF3578
GFF3579 - hypothetical protein, at 337,069 to 337,203
GFF3579
GFF3580 - Transcriptional regulator, MerR family, associated with photolyase, at 337,313 to 338,041
GFF3580
GFF3581 - Secretion system regulator of DegU/UvrY/BvgA type, at 338,220 to 338,858
GFF3581
GFF3582 - Secretion system regulator: Sensor component (EC 2.7.3.-) (EC 2.7.1.40), at 338,889 to 341,651
GFF3582
Position (kb) 337
338
339 Strain fitness (log2 ratio) -1
0
1
2 at 336.445 kb on - strand, within GFF3578 at 336.671 kb on - strand, within GFF3578 at 336.789 kb on - strand, within GFF3578 at 336.789 kb on - strand, within GFF3578 at 336.837 kb on + strand, within GFF3578 at 337.069 kb on - strand at 337.134 kb on + strand, within GFF3579 at 337.599 kb on + strand, within GFF3580 at 337.686 kb on - strand, within GFF3580 at 337.922 kb on + strand, within GFF3580 at 337.923 kb on - strand, within GFF3580 at 337.943 kb on - strand, within GFF3580 at 338.010 kb on - strand at 338.073 kb on - strand at 338.075 kb on - strand at 338.075 kb on - strand at 338.094 kb on + strand at 338.105 kb on + strand at 338.199 kb on - strand at 338.589 kb on - strand, within GFF3581 at 338.590 kb on + strand, within GFF3581 at 338.590 kb on + strand, within GFF3581 at 338.603 kb on - strand, within GFF3581 at 338.646 kb on + strand, within GFF3581 at 338.688 kb on - strand, within GFF3581 at 338.704 kb on - strand, within GFF3581 at 338.704 kb on - strand, within GFF3581 at 338.791 kb on - strand, within GFF3581
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 336,445 - GFF3578 0.30 +1.4 336,671 - GFF3578 0.56 +0.0 336,789 - GFF3578 0.69 +0.2 336,789 - GFF3578 0.69 +0.1 336,837 + GFF3578 0.74 -0.8 337,069 - -0.0 337,134 + GFF3579 0.48 -0.4 337,599 + GFF3580 0.39 -0.0 337,686 - GFF3580 0.51 -0.6 337,922 + GFF3580 0.84 -0.8 337,923 - GFF3580 0.84 -0.7 337,943 - GFF3580 0.86 -0.6 338,010 - -1.2 338,073 - -0.5 338,075 - +0.7 338,075 - +0.2 338,094 + +0.6 338,105 + -0.4 338,199 - -0.6 338,589 - GFF3581 0.58 +0.2 338,590 + GFF3581 0.58 -0.2 338,590 + GFF3581 0.58 +1.9 338,603 - GFF3581 0.60 -0.0 338,646 + GFF3581 0.67 -0.1 338,688 - GFF3581 0.73 +0.6 338,704 - GFF3581 0.76 -0.2 338,704 - GFF3581 0.76 +0.4 338,791 - GFF3581 0.89 -0.4
Or see this region's nucleotide sequence