Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3151 and GFF3152 are separated by 61 nucleotides GFF3152 and GFF3153 overlap by 2 nucleotides GFF3153 and GFF3154 are separated by 13 nucleotides GFF3154 and GFF3155 are separated by 66 nucleotides GFF3155 and GFF3156 are separated by 399 nucleotides
GFF3151 - Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1, at 156,067 to 157,230
GFF3151
GFF3152 - Uncharacterized protein ygiD, at 157,292 to 158,080
GFF3152
GFF3153 - hypothetical protein, at 158,079 to 158,207
GFF3153
GFF3154 - Zinc transporter ZupT, at 158,221 to 158,994
GFF3154
GFF3155 - FIG01045594: hypothetical protein, at 159,061 to 159,237
GFF3155
GFF3156 - Putative arylsulfate sulfotransferase (EC 2.8.2.22), at 159,637 to 160,602
GFF3156
Position (kb) 158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.228 kb on + strand at 157.315 kb on + strand at 157.316 kb on - strand at 157.316 kb on - strand at 157.319 kb on + strand at 157.319 kb on + strand at 157.321 kb on + strand at 157.386 kb on - strand, within GFF3152 at 157.386 kb on - strand, within GFF3152 at 157.452 kb on + strand, within GFF3152 at 157.453 kb on - strand, within GFF3152 at 157.475 kb on + strand, within GFF3152 at 157.475 kb on + strand, within GFF3152 at 157.542 kb on - strand, within GFF3152 at 157.543 kb on + strand, within GFF3152 at 157.577 kb on - strand, within GFF3152 at 157.583 kb on + strand, within GFF3152 at 157.675 kb on + strand, within GFF3152 at 157.730 kb on + strand, within GFF3152 at 157.731 kb on - strand, within GFF3152 at 157.855 kb on - strand, within GFF3152 at 157.930 kb on + strand, within GFF3152 at 158.065 kb on + strand at 158.066 kb on - strand at 158.122 kb on + strand, within GFF3153 at 158.123 kb on - strand, within GFF3153 at 158.175 kb on + strand, within GFF3153 at 158.228 kb on + strand at 158.667 kb on + strand, within GFF3154 at 158.829 kb on + strand, within GFF3154 at 158.913 kb on + strand, within GFF3154 at 158.923 kb on + strand at 158.940 kb on + strand at 159.131 kb on - strand, within GFF3155 at 159.212 kb on - strand, within GFF3155 at 159.845 kb on + strand, within GFF3156 at 159.881 kb on - strand, within GFF3156 at 159.919 kb on - strand, within GFF3156
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 157,228 + -0.2 157,315 + +0.2 157,316 - -0.1 157,316 - +0.2 157,319 + +0.2 157,319 + +0.4 157,321 + -0.9 157,386 - GFF3152 0.12 -0.4 157,386 - GFF3152 0.12 -0.1 157,452 + GFF3152 0.20 +0.5 157,453 - GFF3152 0.20 +1.5 157,475 + GFF3152 0.23 +0.1 157,475 + GFF3152 0.23 +0.2 157,542 - GFF3152 0.32 +0.9 157,543 + GFF3152 0.32 +0.3 157,577 - GFF3152 0.36 +0.3 157,583 + GFF3152 0.37 -1.3 157,675 + GFF3152 0.49 -0.3 157,730 + GFF3152 0.56 -2.4 157,731 - GFF3152 0.56 -0.6 157,855 - GFF3152 0.71 -0.2 157,930 + GFF3152 0.81 -0.2 158,065 + +0.9 158,066 - -0.5 158,122 + GFF3153 0.33 +1.1 158,123 - GFF3153 0.34 +0.0 158,175 + GFF3153 0.74 -0.5 158,228 + -0.7 158,667 + GFF3154 0.58 +0.2 158,829 + GFF3154 0.79 -1.6 158,913 + GFF3154 0.89 -0.7 158,923 + -1.1 158,940 + +0.0 159,131 - GFF3155 0.40 +1.8 159,212 - GFF3155 0.85 +0.2 159,845 + GFF3156 0.22 -0.0 159,881 - GFF3156 0.25 +0.3 159,919 - GFF3156 0.29 -0.4
Or see this region's nucleotide sequence