Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2871

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2871 and GFF2872 are separated by 513 nucleotidesGFF2872 and GFF2873 are separated by 262 nucleotides GFF2871 - hypothetical protein, at 387,096 to 387,242 GFF2871 GFF2872 - hypothetical protein, at 387,756 to 387,881 GFF2872 GFF2873 - hypothetical protein, at 388,144 to 388,260 GFF2873 Position (kb) 387 388Strain fitness (log2 ratio) -1 0 1at 386.353 kb on + strandat 386.536 kb on + strandat 386.637 kb on + strandat 386.637 kb on + strandat 386.637 kb on + strandat 386.641 kb on + strandat 386.883 kb on - strandat 386.903 kb on - strandat 387.084 kb on - strandat 387.180 kb on - strand, within GFF2871at 387.187 kb on - strand, within GFF2871at 387.241 kb on - strandat 387.281 kb on + strandat 387.613 kb on + strandat 387.693 kb on - strandat 387.726 kb on - strandat 388.014 kb on + strandat 388.015 kb on - strandat 388.183 kb on - strand, within GFF2873at 388.185 kb on - strand, within GFF2873

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
remove
386,353 + +0.3
386,536 + -0.2
386,637 + -1.1
386,637 + -0.6
386,637 + +0.1
386,641 + -0.3
386,883 - -1.3
386,903 - +0.4
387,084 - -0.6
387,180 - GFF2871 0.57 -0.7
387,187 - GFF2871 0.62 -0.8
387,241 - +0.9
387,281 + +0.4
387,613 + -0.2
387,693 - -0.6
387,726 - +0.6
388,014 + +0.3
388,015 - -0.5
388,183 - GFF2873 0.33 +0.4
388,185 - GFF2873 0.35 +0.1

Or see this region's nucleotide sequence