Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2592

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2591 and GFF2592 are separated by 536 nucleotidesGFF2592 and GFF2593 are separated by 273 nucleotidesGFF2593 and GFF2594 are separated by 0 nucleotides GFF2591 - D-alanyl-D-alanine dipeptidase (EC 3.4.13.22), at 116,864 to 117,262 GFF2591 GFF2592 - secreted effector protein, at 117,799 to 118,749 GFF2592 GFF2593 - FIG00639831: hypothetical protein, at 119,023 to 119,253 GFF2593 GFF2594 - putative collagenase, at 119,254 to 121,218 GFF2594 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1at 116.833 kb on - strandat 116.926 kb on + strand, within GFF2591at 117.125 kb on + strand, within GFF2591at 117.776 kb on + strandat 118.422 kb on + strand, within GFF2592at 118.911 kb on + strandat 118.992 kb on + strandat 118.992 kb on + strandat 118.992 kb on + strandat 119.005 kb on + strandat 119.045 kb on + strandat 119.140 kb on - strand, within GFF2593at 119.140 kb on - strand, within GFF2593at 119.455 kb on - strand, within GFF2594at 119.527 kb on + strand, within GFF2594at 119.575 kb on + strand, within GFF2594at 119.615 kb on + strand, within GFF2594at 119.725 kb on - strand, within GFF2594

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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116,833 - -0.5
116,926 + GFF2591 0.16 -0.6
117,125 + GFF2591 0.65 -0.3
117,776 + +0.7
118,422 + GFF2592 0.66 -0.6
118,911 + +0.2
118,992 + +0.0
118,992 + +0.1
118,992 + +0.2
119,005 + -0.4
119,045 + -0.5
119,140 - GFF2593 0.51 -0.0
119,140 - GFF2593 0.51 +0.5
119,455 - GFF2594 0.10 -0.5
119,527 + GFF2594 0.14 -0.9
119,575 + GFF2594 0.16 -0.3
119,615 + GFF2594 0.18 -0.3
119,725 - GFF2594 0.24 -2.1

Or see this region's nucleotide sequence