Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2427

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2425 and GFF2426 are separated by 54 nucleotidesGFF2426 and GFF2427 are separated by 385 nucleotidesGFF2427 and GFF2428 are separated by 139 nucleotides GFF2425 - FIG074102: hypothetical protein, at 42,479 to 43,147 GFF2425 GFF2426 - hypothetical protein, at 43,202 to 43,330 GFF2426 GFF2427 - Protein SseB, at 43,716 to 44,462 GFF2427 GFF2428 - Peptidase B (EC 3.4.11.23), at 44,602 to 45,885 GFF2428 Position (kb) 43 44 45Strain fitness (log2 ratio) -1 0 1 2 3at 42.884 kb on + strand, within GFF2425at 43.345 kb on - strandat 43.345 kb on - strandat 43.478 kb on + strandat 43.496 kb on - strandat 43.570 kb on + strandat 43.677 kb on + strandat 43.796 kb on + strand, within GFF2427at 44.016 kb on - strand, within GFF2427at 44.061 kb on + strand, within GFF2427at 44.151 kb on - strand, within GFF2427at 44.285 kb on + strand, within GFF2427at 44.506 kb on + strandat 44.511 kb on - strandat 44.511 kb on - strandat 44.521 kb on + strandat 44.910 kb on + strand, within GFF2428at 44.936 kb on + strand, within GFF2428at 44.993 kb on - strand, within GFF2428at 44.993 kb on - strand, within GFF2428at 45.037 kb on + strand, within GFF2428at 45.082 kb on - strand, within GFF2428at 45.100 kb on - strand, within GFF2428at 45.114 kb on + strand, within GFF2428at 45.298 kb on - strand, within GFF2428at 45.320 kb on + strand, within GFF2428at 45.416 kb on + strand, within GFF2428

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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42,884 + GFF2425 0.61 +0.5
43,345 - -0.3
43,345 - +1.0
43,478 + -1.1
43,496 - +0.0
43,570 + -0.7
43,677 + +0.4
43,796 + GFF2427 0.11 -1.5
44,016 - GFF2427 0.40 -1.4
44,061 + GFF2427 0.46 -0.1
44,151 - GFF2427 0.58 +0.5
44,285 + GFF2427 0.76 -0.5
44,506 + +1.2
44,511 - +0.3
44,511 - -0.4
44,521 + -0.1
44,910 + GFF2428 0.24 +0.7
44,936 + GFF2428 0.26 +0.7
44,993 - GFF2428 0.30 -0.2
44,993 - GFF2428 0.30 +0.7
45,037 + GFF2428 0.34 +0.5
45,082 - GFF2428 0.37 +0.2
45,100 - GFF2428 0.39 -0.7
45,114 + GFF2428 0.40 +1.5
45,298 - GFF2428 0.54 -0.2
45,320 + GFF2428 0.56 +3.0
45,416 + GFF2428 0.63 -0.4

Or see this region's nucleotide sequence