Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2338

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2337 and GFF2338 overlap by 35 nucleotidesGFF2338 and GFF2339 are separated by 1 nucleotidesGFF2339 and GFF2340 overlap by 14 nucleotides GFF2337 - Pyruvate formate-lyase (EC 2.3.1.54), at 127,738 to 130,035 GFF2337 GFF2338 - Pyruvate formate-lyase activating enzyme (EC 1.97.1.4), at 130,001 to 130,879 GFF2338 GFF2339 - PTS system fructose-like IIB component 2 precursor (EC 2.7.1.69), at 130,881 to 131,234 GFF2339 GFF2340 - Transcriptional regulator, AraC family, at 131,221 to 132,072 GFF2340 Position (kb) 130 131Strain fitness (log2 ratio) -2 -1 0 1at 129.106 kb on - strand, within GFF2337at 129.106 kb on - strand, within GFF2337at 129.106 kb on - strand, within GFF2337at 129.109 kb on + strand, within GFF2337at 129.110 kb on - strand, within GFF2337at 129.151 kb on + strand, within GFF2337at 129.156 kb on + strand, within GFF2337at 129.157 kb on - strand, within GFF2337at 129.157 kb on - strand, within GFF2337at 129.157 kb on - strand, within GFF2337at 129.157 kb on - strand, within GFF2337at 129.161 kb on + strand, within GFF2337at 129.168 kb on - strand, within GFF2337at 129.359 kb on + strand, within GFF2337at 129.735 kb on + strand, within GFF2337at 129.735 kb on + strand, within GFF2337at 129.736 kb on - strand, within GFF2337at 129.879 kb on + strandat 129.880 kb on - strandat 129.961 kb on + strandat 130.069 kb on + strandat 130.078 kb on + strandat 130.292 kb on - strand, within GFF2338at 130.295 kb on - strand, within GFF2338at 130.416 kb on + strand, within GFF2338at 130.485 kb on + strand, within GFF2338at 130.485 kb on + strand, within GFF2338at 130.515 kb on + strand, within GFF2338at 130.515 kb on + strand, within GFF2338at 130.516 kb on - strand, within GFF2338at 130.596 kb on + strand, within GFF2338at 130.707 kb on + strand, within GFF2338at 130.708 kb on - strand, within GFF2338at 130.713 kb on + strand, within GFF2338at 130.944 kb on + strand, within GFF2339at 130.944 kb on + strand, within GFF2339at 130.944 kb on + strand, within GFF2339at 130.944 kb on + strand, within GFF2339at 130.945 kb on - strand, within GFF2339at 130.945 kb on - strand, within GFF2339at 130.945 kb on - strand, within GFF2339at 130.945 kb on - strand, within GFF2339at 130.945 kb on - strand, within GFF2339at 130.946 kb on + strand, within GFF2339at 130.946 kb on + strand, within GFF2339at 131.173 kb on + strand, within GFF2339at 131.214 kb on - strandat 131.295 kb on + strandat 131.296 kb on - strandat 131.322 kb on - strand, within GFF2340at 131.326 kb on - strand, within GFF2340at 131.326 kb on - strand, within GFF2340at 131.326 kb on - strand, within GFF2340at 131.412 kb on + strand, within GFF2340at 131.485 kb on - strand, within GFF2340at 131.487 kb on - strand, within GFF2340at 131.623 kb on + strand, within GFF2340at 131.624 kb on - strand, within GFF2340at 131.627 kb on - strand, within GFF2340at 131.685 kb on + strand, within GFF2340at 131.685 kb on + strand, within GFF2340at 131.792 kb on - strand, within GFF2340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
remove
129,106 - GFF2337 0.60 +1.0
129,106 - GFF2337 0.60 -0.5
129,106 - GFF2337 0.60 +0.6
129,109 + GFF2337 0.60 -0.1
129,110 - GFF2337 0.60 +0.9
129,151 + GFF2337 0.61 +0.4
129,156 + GFF2337 0.62 +1.5
129,157 - GFF2337 0.62 +1.0
129,157 - GFF2337 0.62 +1.1
129,157 - GFF2337 0.62 +0.5
129,157 - GFF2337 0.62 -0.2
129,161 + GFF2337 0.62 +0.4
129,168 - GFF2337 0.62 +0.5
129,359 + GFF2337 0.71 +0.6
129,735 + GFF2337 0.87 +0.4
129,735 + GFF2337 0.87 -1.7
129,736 - GFF2337 0.87 -0.3
129,879 + -0.1
129,880 - +0.0
129,961 + -0.5
130,069 + +0.2
130,078 + +0.1
130,292 - GFF2338 0.33 -1.1
130,295 - GFF2338 0.33 +0.6
130,416 + GFF2338 0.47 -0.4
130,485 + GFF2338 0.55 -0.3
130,485 + GFF2338 0.55 +0.5
130,515 + GFF2338 0.58 +0.2
130,515 + GFF2338 0.58 -0.7
130,516 - GFF2338 0.59 -0.2
130,596 + GFF2338 0.68 -1.9
130,707 + GFF2338 0.80 -0.6
130,708 - GFF2338 0.80 -1.0
130,713 + GFF2338 0.81 -0.6
130,944 + GFF2339 0.18 +0.2
130,944 + GFF2339 0.18 +0.2
130,944 + GFF2339 0.18 -0.1
130,944 + GFF2339 0.18 +0.4
130,945 - GFF2339 0.18 +0.1
130,945 - GFF2339 0.18 +0.0
130,945 - GFF2339 0.18 +1.5
130,945 - GFF2339 0.18 -0.6
130,945 - GFF2339 0.18 +0.0
130,946 + GFF2339 0.18 +0.2
130,946 + GFF2339 0.18 -0.1
131,173 + GFF2339 0.82 +1.6
131,214 - +0.5
131,295 + +1.1
131,296 - +0.4
131,322 - GFF2340 0.12 +0.4
131,326 - GFF2340 0.12 +0.2
131,326 - GFF2340 0.12 +0.1
131,326 - GFF2340 0.12 +0.0
131,412 + GFF2340 0.22 +0.4
131,485 - GFF2340 0.31 -0.4
131,487 - GFF2340 0.31 -0.1
131,623 + GFF2340 0.47 +0.8
131,624 - GFF2340 0.47 +0.5
131,627 - GFF2340 0.48 -0.0
131,685 + GFF2340 0.54 +0.3
131,685 + GFF2340 0.54 -0.0
131,792 - GFF2340 0.67 +0.5

Or see this region's nucleotide sequence