Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1434

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1433 and GFF1434 overlap by 4 nucleotidesGFF1434 and GFF1435 are separated by 382 nucleotides GFF1433 - Putative inner membrane or exported protein, at 77,988 to 78,620 GFF1433 GFF1434 - FIG00732228: membrane protein, at 78,617 to 80,005 GFF1434 GFF1435 - Agglutination protein, at 80,388 to 81,314 GFF1435 Position (kb) 78 79 80 81Strain fitness (log2 ratio) -1 0 1at 78.271 kb on + strand, within GFF1433at 78.305 kb on - strand, within GFF1433at 79.100 kb on - strand, within GFF1434at 79.189 kb on + strand, within GFF1434at 79.190 kb on - strand, within GFF1434at 79.913 kb on - strandat 80.128 kb on - strandat 80.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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78,271 + GFF1433 0.45 +0.0
78,305 - GFF1433 0.50 +0.5
79,100 - GFF1434 0.35 -0.8
79,189 + GFF1434 0.41 +0.0
79,190 - GFF1434 0.41 -0.8
79,913 - +0.8
80,128 - +0.1
80,438 - +0.7

Or see this region's nucleotide sequence