Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1331 and GFF1332 are separated by 103 nucleotides GFF1332 and GFF1333 are separated by 141 nucleotides GFF1333 and GFF1334 are separated by 30 nucleotides GFF1334 and GFF1335 are separated by 121 nucleotides
GFF1331 - LysR-family transcriptional regulator STM3020, at 39,767 to 40,630
GFF1331
GFF1332 - FIG01045951: hypothetical protein, at 40,734 to 41,189
GFF1332
GFF1333 - Serine transporter, at 41,331 to 42,560
GFF1333
GFF1334 - Uncharacterized protein YohL, at 42,591 to 42,863
GFF1334
GFF1335 - Nickel/cobalt efflux transporter RcnA, at 42,985 to 43,851
GFF1335
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1 at 40.425 kb on + strand, within GFF1331 at 40.425 kb on + strand, within GFF1331 at 40.426 kb on - strand, within GFF1331 at 40.429 kb on + strand, within GFF1331 at 40.429 kb on + strand, within GFF1331 at 40.430 kb on - strand, within GFF1331 at 40.430 kb on - strand, within GFF1331 at 40.430 kb on - strand, within GFF1331 at 40.604 kb on + strand at 40.607 kb on + strand at 40.607 kb on + strand at 40.635 kb on + strand at 40.639 kb on + strand at 41.063 kb on - strand, within GFF1332 at 41.190 kb on + strand at 41.276 kb on - strand at 41.379 kb on + strand at 41.379 kb on + strand at 41.892 kb on - strand, within GFF1333 at 41.951 kb on + strand, within GFF1333 at 42.015 kb on - strand, within GFF1333 at 42.109 kb on - strand, within GFF1333 at 42.109 kb on - strand, within GFF1333 at 42.278 kb on - strand, within GFF1333 at 42.368 kb on + strand, within GFF1333 at 42.405 kb on + strand, within GFF1333 at 42.405 kb on + strand, within GFF1333 at 42.406 kb on - strand, within GFF1333 at 42.465 kb on + strand at 42.503 kb on + strand at 42.559 kb on - strand at 42.717 kb on + strand, within GFF1334 at 43.093 kb on - strand, within GFF1335 at 43.093 kb on - strand, within GFF1335 at 43.107 kb on + strand, within GFF1335 at 43.108 kb on - strand, within GFF1335 at 43.210 kb on + strand, within GFF1335 at 43.210 kb on + strand, within GFF1335 at 43.442 kb on + strand, within GFF1335 at 43.442 kb on + strand, within GFF1335 at 43.442 kb on + strand, within GFF1335 at 43.442 kb on + strand, within GFF1335 at 43.443 kb on - strand, within GFF1335 at 43.443 kb on - strand, within GFF1335 at 43.443 kb on - strand, within GFF1335 at 43.471 kb on + strand, within GFF1335 at 43.539 kb on + strand, within GFF1335
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 40,425 + GFF1331 0.76 +0.2 40,425 + GFF1331 0.76 +0.2 40,426 - GFF1331 0.76 +0.2 40,429 + GFF1331 0.77 +0.1 40,429 + GFF1331 0.77 -0.0 40,430 - GFF1331 0.77 +0.5 40,430 - GFF1331 0.77 +0.2 40,430 - GFF1331 0.77 +0.2 40,604 + +0.2 40,607 + -0.1 40,607 + -1.6 40,635 + +0.8 40,639 + -0.5 41,063 - GFF1332 0.72 +0.4 41,190 + +0.4 41,276 - -1.1 41,379 + -0.3 41,379 + -0.2 41,892 - GFF1333 0.46 +0.2 41,951 + GFF1333 0.50 -0.2 42,015 - GFF1333 0.56 -0.1 42,109 - GFF1333 0.63 -1.6 42,109 - GFF1333 0.63 -0.8 42,278 - GFF1333 0.77 +0.1 42,368 + GFF1333 0.84 -0.4 42,405 + GFF1333 0.87 -0.2 42,405 + GFF1333 0.87 +0.5 42,406 - GFF1333 0.87 -0.3 42,465 + +0.4 42,503 + -0.4 42,559 - -0.3 42,717 + GFF1334 0.46 -1.1 43,093 - GFF1335 0.12 -0.0 43,093 - GFF1335 0.12 -0.3 43,107 + GFF1335 0.14 -0.0 43,108 - GFF1335 0.14 +0.1 43,210 + GFF1335 0.26 +0.5 43,210 + GFF1335 0.26 -0.1 43,442 + GFF1335 0.53 +0.5 43,442 + GFF1335 0.53 +0.4 43,442 + GFF1335 0.53 -0.0 43,442 + GFF1335 0.53 -0.2 43,443 - GFF1335 0.53 +0.3 43,443 - GFF1335 0.53 -1.0 43,443 - GFF1335 0.53 -0.7 43,471 + GFF1335 0.56 -0.6 43,539 + GFF1335 0.64 -0.8
Or see this region's nucleotide sequence