Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1857

Experiment: motility

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1855 and B158DRAFT_1856 are separated by 17 nucleotidesB158DRAFT_1856 and B158DRAFT_1857 are separated by 96 nucleotidesB158DRAFT_1857 and B158DRAFT_1858 are separated by 125 nucleotidesB158DRAFT_1858 and B158DRAFT_1859 are separated by 98 nucleotidesB158DRAFT_1859 and B158DRAFT_1860 are separated by 19 nucleotidesB158DRAFT_1860 and B158DRAFT_1861 are separated by 127 nucleotides B158DRAFT_1855: B158DRAFT_1855 - birA, biotin-[acetyl-CoA-carboxylase] ligase region, at 6,092 to 7,069 _1855 B158DRAFT_1856: B158DRAFT_1856 - pantothenate kinase, type III, at 7,087 to 7,935 _1856 B158DRAFT_1857: B158DRAFT_1857 - tRNA_Thr_TGT, at 8,032 to 8,107 _1857 B158DRAFT_1858: B158DRAFT_1858 - tRNA_Tyr_GTA, at 8,233 to 8,316 _1858 B158DRAFT_1859: B158DRAFT_1859 - tRNA_Gly_TCC, at 8,415 to 8,488 _1859 B158DRAFT_1860: B158DRAFT_1860 - tRNA_Thr_GGT, at 8,508 to 8,583 _1860 B158DRAFT_1861: B158DRAFT_1861 - small GTP-binding protein domain, at 8,711 to 10,018 _1861 Position (kb) 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 7.040 kb on + strandat 7.068 kb on + strandat 7.075 kb on + strandat 8.126 kb on - strandat 8.134 kb on + strandat 8.599 kb on + strandat 8.945 kb on + strand, within B158DRAFT_1861at 8.945 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.955 kb on + strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.963 kb on - strand, within B158DRAFT_1861at 8.983 kb on - strand, within B158DRAFT_1861at 8.999 kb on + strand, within B158DRAFT_1861at 8.999 kb on + strand, within B158DRAFT_1861at 8.999 kb on + strand, within B158DRAFT_1861at 8.999 kb on + strand, within B158DRAFT_1861at 8.999 kb on + strand, within B158DRAFT_1861at 9.007 kb on - strand, within B158DRAFT_1861at 9.007 kb on - strand, within B158DRAFT_1861at 9.007 kb on - strand, within B158DRAFT_1861at 9.007 kb on - strand, within B158DRAFT_1861at 9.007 kb on - strand, within B158DRAFT_1861at 9.007 kb on - strand, within B158DRAFT_1861at 9.042 kb on + strand, within B158DRAFT_1861at 9.049 kb on + strand, within B158DRAFT_1861at 9.049 kb on + strand, within B158DRAFT_1861at 9.049 kb on + strand, within B158DRAFT_1861at 9.065 kb on - strand, within B158DRAFT_1861at 9.065 kb on - strand, within B158DRAFT_1861

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Per-strain Table

Position Strand Gene LocusTag Fraction motility
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7,040 + -1.6
7,068 + -2.1
7,075 + +1.9
8,126 - -2.1
8,134 + -1.8
8,599 + -3.5
8,945 + B158DRAFT_1861 0.18 -2.2
8,945 + B158DRAFT_1861 0.18 -0.5
8,955 + B158DRAFT_1861 0.19 -0.0
8,955 + B158DRAFT_1861 0.19 -1.2
8,955 + B158DRAFT_1861 0.19 -1.8
8,955 + B158DRAFT_1861 0.19 +0.6
8,955 + B158DRAFT_1861 0.19 -2.7
8,955 + B158DRAFT_1861 0.19 -1.2
8,955 + B158DRAFT_1861 0.19 -0.0
8,955 + B158DRAFT_1861 0.19 -3.1
8,963 - B158DRAFT_1861 0.19 -1.5
8,963 - B158DRAFT_1861 0.19 -0.4
8,963 - B158DRAFT_1861 0.19 -0.7
8,963 - B158DRAFT_1861 0.19 -0.1
8,963 - B158DRAFT_1861 0.19 -1.1
8,963 - B158DRAFT_1861 0.19 -0.5
8,963 - B158DRAFT_1861 0.19 -0.8
8,963 - B158DRAFT_1861 0.19 -1.5
8,963 - B158DRAFT_1861 0.19 -1.9
8,963 - B158DRAFT_1861 0.19 -3.4
8,963 - B158DRAFT_1861 0.19 -0.8
8,963 - B158DRAFT_1861 0.19 +0.6
8,983 - B158DRAFT_1861 0.21 +0.8
8,999 + B158DRAFT_1861 0.22 -1.8
8,999 + B158DRAFT_1861 0.22 -1.3
8,999 + B158DRAFT_1861 0.22 +0.3
8,999 + B158DRAFT_1861 0.22 +0.9
8,999 + B158DRAFT_1861 0.22 -1.9
9,007 - B158DRAFT_1861 0.23 +1.2
9,007 - B158DRAFT_1861 0.23 -1.7
9,007 - B158DRAFT_1861 0.23 -0.5
9,007 - B158DRAFT_1861 0.23 -0.9
9,007 - B158DRAFT_1861 0.23 -0.2
9,007 - B158DRAFT_1861 0.23 -1.7
9,042 + B158DRAFT_1861 0.25 +0.1
9,049 + B158DRAFT_1861 0.26 +0.6
9,049 + B158DRAFT_1861 0.26 +0.2
9,049 + B158DRAFT_1861 0.26 +0.6
9,065 - B158DRAFT_1861 0.27 +4.4
9,065 - B158DRAFT_1861 0.27 -1.5

Or see this region's nucleotide sequence