Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1539

Experiment: motility

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1537 and B158DRAFT_1538 are separated by 126 nucleotidesB158DRAFT_1538 and B158DRAFT_1539 are separated by 320 nucleotidesB158DRAFT_1539 and B158DRAFT_1540 are separated by 184 nucleotidesB158DRAFT_1540 and B158DRAFT_1541 are separated by 195 nucleotides B158DRAFT_1537: B158DRAFT_1537 - hypothetical protein, at 1,591,864 to 1,592,316 _1537 B158DRAFT_1538: B158DRAFT_1538 - Uncharacterized conserved protein, at 1,592,443 to 1,592,655 _1538 B158DRAFT_1539: B158DRAFT_1539 - hypothetical protein, at 1,592,976 to 1,595,576 _1539 B158DRAFT_1540: B158DRAFT_1540 - hypothetical protein, at 1,595,761 to 1,596,012 _1540 B158DRAFT_1541: B158DRAFT_1541 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,596,208 to 1,596,966 _1541 Position (kb) 1592 1593 1594 1595 1596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1592.944 kb on + strandat 1592.944 kb on + strandat 1592.944 kb on + strandat 1592.944 kb on + strandat 1592.958 kb on - strandat 1593.199 kb on - strandat 1593.419 kb on + strand, within B158DRAFT_1539at 1593.608 kb on + strand, within B158DRAFT_1539at 1593.641 kb on + strand, within B158DRAFT_1539at 1593.748 kb on + strand, within B158DRAFT_1539at 1594.109 kb on + strand, within B158DRAFT_1539at 1594.117 kb on - strand, within B158DRAFT_1539at 1594.326 kb on - strand, within B158DRAFT_1539at 1594.378 kb on - strand, within B158DRAFT_1539at 1594.658 kb on - strand, within B158DRAFT_1539at 1594.770 kb on - strand, within B158DRAFT_1539at 1594.857 kb on - strand, within B158DRAFT_1539at 1595.017 kb on - strand, within B158DRAFT_1539at 1595.094 kb on + strand, within B158DRAFT_1539at 1595.102 kb on - strand, within B158DRAFT_1539at 1595.108 kb on + strand, within B158DRAFT_1539at 1595.224 kb on - strand, within B158DRAFT_1539at 1595.438 kb on + strandat 1595.805 kb on + strand, within B158DRAFT_1540at 1595.879 kb on + strand, within B158DRAFT_1540at 1595.879 kb on + strand, within B158DRAFT_1540at 1595.949 kb on + strand, within B158DRAFT_1540at 1595.949 kb on + strand, within B158DRAFT_1540at 1595.949 kb on + strand, within B158DRAFT_1540at 1595.957 kb on - strand, within B158DRAFT_1540at 1595.969 kb on - strand, within B158DRAFT_1540at 1596.096 kb on + strandat 1596.117 kb on + strandat 1596.171 kb on + strandat 1596.179 kb on - strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.261 kb on + strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.269 kb on - strandat 1596.274 kb on - strandat 1596.281 kb on + strandat 1596.289 kb on - strand, within B158DRAFT_1541at 1596.291 kb on + strand, within B158DRAFT_1541at 1596.298 kb on + strand, within B158DRAFT_1541at 1596.315 kb on + strand, within B158DRAFT_1541at 1596.315 kb on + strand, within B158DRAFT_1541at 1596.315 kb on + strand, within B158DRAFT_1541at 1596.328 kb on + strand, within B158DRAFT_1541at 1596.344 kb on + strand, within B158DRAFT_1541at 1596.387 kb on + strand, within B158DRAFT_1541at 1596.395 kb on - strand, within B158DRAFT_1541at 1596.427 kb on + strand, within B158DRAFT_1541at 1596.428 kb on + strand, within B158DRAFT_1541at 1596.435 kb on - strand, within B158DRAFT_1541at 1596.453 kb on + strand, within B158DRAFT_1541at 1596.496 kb on - strand, within B158DRAFT_1541at 1596.550 kb on - strand, within B158DRAFT_1541

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction motility
remove
1,592,944 + -0.9
1,592,944 + -0.2
1,592,944 + -1.8
1,592,944 + -1.1
1,592,958 - -2.9
1,593,199 - -1.0
1,593,419 + B158DRAFT_1539 0.17 -0.2
1,593,608 + B158DRAFT_1539 0.24 +0.2
1,593,641 + B158DRAFT_1539 0.26 -0.9
1,593,748 + B158DRAFT_1539 0.30 -1.1
1,594,109 + B158DRAFT_1539 0.44 -1.1
1,594,117 - B158DRAFT_1539 0.44 -0.5
1,594,326 - B158DRAFT_1539 0.52 +0.4
1,594,378 - B158DRAFT_1539 0.54 +0.1
1,594,658 - B158DRAFT_1539 0.65 +0.1
1,594,770 - B158DRAFT_1539 0.69 -1.9
1,594,857 - B158DRAFT_1539 0.72 -0.1
1,595,017 - B158DRAFT_1539 0.78 -2.4
1,595,094 + B158DRAFT_1539 0.81 -0.3
1,595,102 - B158DRAFT_1539 0.82 +0.0
1,595,108 + B158DRAFT_1539 0.82 -1.6
1,595,224 - B158DRAFT_1539 0.86 +0.3
1,595,438 + +1.0
1,595,805 + B158DRAFT_1540 0.17 -0.5
1,595,879 + B158DRAFT_1540 0.47 -1.1
1,595,879 + B158DRAFT_1540 0.47 -0.6
1,595,949 + B158DRAFT_1540 0.75 -1.0
1,595,949 + B158DRAFT_1540 0.75 -0.4
1,595,949 + B158DRAFT_1540 0.75 +0.2
1,595,957 - B158DRAFT_1540 0.78 +0.9
1,595,969 - B158DRAFT_1540 0.83 -1.2
1,596,096 + +4.1
1,596,117 + +0.6
1,596,171 + +0.2
1,596,179 - -2.3
1,596,261 + -0.8
1,596,261 + +1.0
1,596,261 + +0.8
1,596,261 + +1.0
1,596,261 + -1.9
1,596,261 + +0.1
1,596,261 + +0.4
1,596,261 + -0.2
1,596,261 + -0.9
1,596,261 + +3.1
1,596,261 + -0.2
1,596,261 + -2.0
1,596,261 + +0.7
1,596,261 + -1.0
1,596,261 + -1.5
1,596,261 + -0.9
1,596,261 + -2.5
1,596,261 + -2.9
1,596,261 + +0.5
1,596,261 + +1.0
1,596,261 + +1.7
1,596,261 + +0.5
1,596,261 + -0.0
1,596,261 + -2.0
1,596,261 + -1.2
1,596,261 + -0.3
1,596,261 + +0.5
1,596,261 + -0.6
1,596,261 + -1.8
1,596,261 + -0.6
1,596,261 + +1.2
1,596,261 + +0.2
1,596,269 - +1.9
1,596,269 - +0.7
1,596,269 - +1.0
1,596,269 - -0.5
1,596,269 - -0.8
1,596,269 - -0.6
1,596,269 - -1.2
1,596,269 - -1.6
1,596,269 - -0.5
1,596,269 - -0.1
1,596,269 - -1.8
1,596,269 - -1.3
1,596,269 - -1.8
1,596,269 - +1.3
1,596,269 - -0.9
1,596,269 - -0.5
1,596,269 - -1.7
1,596,269 - -1.1
1,596,269 - +0.2
1,596,269 - -0.1
1,596,269 - -1.1
1,596,269 - +1.1
1,596,269 - -3.1
1,596,274 - -1.5
1,596,281 + -0.5
1,596,289 - B158DRAFT_1541 0.11 -0.9
1,596,291 + B158DRAFT_1541 0.11 +0.1
1,596,298 + B158DRAFT_1541 0.12 +0.6
1,596,315 + B158DRAFT_1541 0.14 +1.2
1,596,315 + B158DRAFT_1541 0.14 -0.2
1,596,315 + B158DRAFT_1541 0.14 +0.7
1,596,328 + B158DRAFT_1541 0.16 +0.6
1,596,344 + B158DRAFT_1541 0.18 -0.5
1,596,387 + B158DRAFT_1541 0.24 -1.2
1,596,395 - B158DRAFT_1541 0.25 -2.2
1,596,427 + B158DRAFT_1541 0.29 -0.0
1,596,428 + B158DRAFT_1541 0.29 +0.0
1,596,435 - B158DRAFT_1541 0.30 -1.4
1,596,453 + B158DRAFT_1541 0.32 +2.2
1,596,496 - B158DRAFT_1541 0.38 -2.2
1,596,550 - B158DRAFT_1541 0.45 -0.2

Or see this region's nucleotide sequence