Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1041

Experiment: motility

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1038 and B158DRAFT_1039 are separated by 170 nucleotidesB158DRAFT_1039 and B158DRAFT_1040 are separated by 13 nucleotidesB158DRAFT_1040 and B158DRAFT_1041 are separated by 38 nucleotidesB158DRAFT_1041 and B158DRAFT_1042 are separated by 190 nucleotides B158DRAFT_1038: B158DRAFT_1038 - ATP-dependent protease La, at 1,076,908 to 1,079,316 _1038 B158DRAFT_1039: B158DRAFT_1039 - Bacterial nucleoid DNA-binding protein, at 1,079,487 to 1,079,759 _1039 B158DRAFT_1040: B158DRAFT_1040 - tRNA_Val_TAC, at 1,079,773 to 1,079,848 _1040 B158DRAFT_1041: B158DRAFT_1041 - tRNA_Asp_GTC, at 1,079,887 to 1,079,963 _1041 B158DRAFT_1042: B158DRAFT_1042 - Parvulin-like peptidyl-prolyl isomerase, at 1,080,154 to 1,082,070 _1042 Position (kb) 1079 1080Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1079.044 kb on + strand, within B158DRAFT_1038at 1079.044 kb on + strand, within B158DRAFT_1038at 1079.052 kb on - strand, within B158DRAFT_1038at 1079.218 kb on - strandat 1079.220 kb on + strandat 1079.220 kb on + strandat 1079.228 kb on + strandat 1079.228 kb on - strandat 1079.228 kb on - strandat 1079.228 kb on - strandat 1079.228 kb on - strandat 1079.228 kb on - strandat 1079.249 kb on - strandat 1079.249 kb on - strandat 1079.249 kb on - strandat 1079.428 kb on - strandat 1079.534 kb on + strand, within B158DRAFT_1039at 1079.534 kb on + strand, within B158DRAFT_1039at 1079.542 kb on - strand, within B158DRAFT_1039at 1079.640 kb on + strand, within B158DRAFT_1039at 1079.640 kb on + strand, within B158DRAFT_1039at 1079.648 kb on - strand, within B158DRAFT_1039at 1079.696 kb on + strand, within B158DRAFT_1039at 1079.704 kb on - strand, within B158DRAFT_1039at 1079.836 kb on + strand, within B158DRAFT_1040at 1079.836 kb on + strand, within B158DRAFT_1040at 1079.867 kb on - strandat 1079.912 kb on - strand, within B158DRAFT_1041at 1079.912 kb on - strand, within B158DRAFT_1041at 1079.912 kb on - strand, within B158DRAFT_1041at 1079.939 kb on + strand, within B158DRAFT_1041at 1079.966 kb on + strandat 1080.006 kb on + strandat 1080.006 kb on + strandat 1080.006 kb on + strandat 1080.006 kb on + strandat 1080.012 kb on - strandat 1080.025 kb on + strandat 1080.025 kb on + strandat 1080.026 kb on - strandat 1080.033 kb on - strandat 1080.039 kb on - strandat 1080.167 kb on + strandat 1080.180 kb on - strandat 1080.261 kb on + strandat 1080.261 kb on + strandat 1080.264 kb on - strandat 1080.269 kb on - strandat 1080.292 kb on + strandat 1080.306 kb on + strandat 1080.306 kb on + strandat 1080.306 kb on + strandat 1080.306 kb on + strandat 1080.306 kb on + strandat 1080.306 kb on + strandat 1080.306 kb on + strandat 1080.306 kb on + strandat 1080.314 kb on - strandat 1080.314 kb on - strandat 1080.314 kb on - strandat 1080.314 kb on - strandat 1080.314 kb on - strandat 1080.340 kb on - strandat 1080.359 kb on - strand, within B158DRAFT_1042at 1080.385 kb on + strand, within B158DRAFT_1042at 1080.444 kb on + strand, within B158DRAFT_1042at 1080.506 kb on + strand, within B158DRAFT_1042at 1080.525 kb on + strand, within B158DRAFT_1042at 1080.548 kb on + strand, within B158DRAFT_1042at 1080.551 kb on - strand, within B158DRAFT_1042at 1080.556 kb on - strand, within B158DRAFT_1042at 1080.574 kb on + strand, within B158DRAFT_1042at 1080.634 kb on - strand, within B158DRAFT_1042at 1080.657 kb on - strand, within B158DRAFT_1042at 1080.657 kb on - strand, within B158DRAFT_1042at 1080.928 kb on + strand, within B158DRAFT_1042at 1080.929 kb on - strand, within B158DRAFT_1042at 1080.947 kb on + strand, within B158DRAFT_1042

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Per-strain Table

Position Strand Gene LocusTag Fraction motility
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1,079,044 + B158DRAFT_1038 0.89 +0.5
1,079,044 + B158DRAFT_1038 0.89 -1.4
1,079,052 - B158DRAFT_1038 0.89 -0.1
1,079,218 - -0.4
1,079,220 + -2.7
1,079,220 + -0.5
1,079,228 + +1.4
1,079,228 - -0.6
1,079,228 - +0.7
1,079,228 - +0.0
1,079,228 - +0.5
1,079,228 - +0.6
1,079,249 - -1.3
1,079,249 - -1.4
1,079,249 - -0.3
1,079,428 - -2.3
1,079,534 + B158DRAFT_1039 0.17 -1.5
1,079,534 + B158DRAFT_1039 0.17 -2.6
1,079,542 - B158DRAFT_1039 0.20 +0.2
1,079,640 + B158DRAFT_1039 0.56 -3.0
1,079,640 + B158DRAFT_1039 0.56 -1.5
1,079,648 - B158DRAFT_1039 0.59 -0.8
1,079,696 + B158DRAFT_1039 0.77 +0.2
1,079,704 - B158DRAFT_1039 0.79 -1.0
1,079,836 + B158DRAFT_1040 0.83 -0.0
1,079,836 + B158DRAFT_1040 0.83 +0.1
1,079,867 - -1.0
1,079,912 - B158DRAFT_1041 0.32 +1.0
1,079,912 - B158DRAFT_1041 0.32 -1.9
1,079,912 - B158DRAFT_1041 0.32 +3.2
1,079,939 + B158DRAFT_1041 0.68 -1.8
1,079,966 + +3.9
1,080,006 + -0.8
1,080,006 + -0.5
1,080,006 + +0.4
1,080,006 + -0.5
1,080,012 - -1.0
1,080,025 + +0.6
1,080,025 + +0.1
1,080,026 - +1.8
1,080,033 - +0.2
1,080,039 - -0.6
1,080,167 + -0.8
1,080,180 - +2.0
1,080,261 + -0.0
1,080,261 + -0.2
1,080,264 - +0.2
1,080,269 - -0.9
1,080,292 + -1.2
1,080,306 + -0.8
1,080,306 + +1.9
1,080,306 + +0.9
1,080,306 + -1.7
1,080,306 + +1.2
1,080,306 + +0.6
1,080,306 + +0.6
1,080,306 + -2.2
1,080,314 - -0.6
1,080,314 - -2.0
1,080,314 - -3.1
1,080,314 - -3.1
1,080,314 - -0.2
1,080,340 - -0.4
1,080,359 - B158DRAFT_1042 0.11 -1.2
1,080,385 + B158DRAFT_1042 0.12 -0.7
1,080,444 + B158DRAFT_1042 0.15 -3.1
1,080,506 + B158DRAFT_1042 0.18 -0.9
1,080,525 + B158DRAFT_1042 0.19 -0.4
1,080,548 + B158DRAFT_1042 0.21 +1.3
1,080,551 - B158DRAFT_1042 0.21 +1.8
1,080,556 - B158DRAFT_1042 0.21 +1.0
1,080,574 + B158DRAFT_1042 0.22 -2.3
1,080,634 - B158DRAFT_1042 0.25 -0.5
1,080,657 - B158DRAFT_1042 0.26 +7.4
1,080,657 - B158DRAFT_1042 0.26 -1.1
1,080,928 + B158DRAFT_1042 0.40 -1.1
1,080,929 - B158DRAFT_1042 0.40 -2.1
1,080,947 + B158DRAFT_1042 0.41 -0.3

Or see this region's nucleotide sequence