Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_716

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_715 and PfGW456L13_716 are separated by 4 nucleotidesPfGW456L13_716 and PfGW456L13_717 are separated by 26 nucleotidesPfGW456L13_717 and PfGW456L13_718 overlap by 39 nucleotides PfGW456L13_715 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 811,943 to 812,914 _715 PfGW456L13_716 - FIG00957502: hypothetical protein, at 812,919 to 813,332 _716 PfGW456L13_717 - hypothetical protein, at 813,359 to 813,490 _717 PfGW456L13_718 - Pyridoxal kinase (EC 2.7.1.35), at 813,452 to 814,324 _718 Position (kb) 812 813 814Strain fitness (log2 ratio) -2 -1 0 1at 811.955 kb on - strandat 812.117 kb on - strand, within PfGW456L13_715at 812.398 kb on - strand, within PfGW456L13_715at 812.398 kb on - strand, within PfGW456L13_715at 812.398 kb on - strand, within PfGW456L13_715at 812.400 kb on + strand, within PfGW456L13_715at 812.400 kb on + strand, within PfGW456L13_715at 812.400 kb on + strand, within PfGW456L13_715at 812.401 kb on - strand, within PfGW456L13_715at 812.401 kb on - strand, within PfGW456L13_715at 812.401 kb on - strand, within PfGW456L13_715at 812.499 kb on + strand, within PfGW456L13_715at 812.499 kb on + strand, within PfGW456L13_715at 812.551 kb on + strand, within PfGW456L13_715at 812.551 kb on + strand, within PfGW456L13_715at 812.551 kb on + strand, within PfGW456L13_715at 812.650 kb on + strand, within PfGW456L13_715at 813.119 kb on + strand, within PfGW456L13_716at 813.119 kb on + strand, within PfGW456L13_716at 813.120 kb on - strand, within PfGW456L13_716at 813.121 kb on + strand, within PfGW456L13_716at 813.121 kb on + strand, within PfGW456L13_716at 813.121 kb on + strand, within PfGW456L13_716at 813.122 kb on - strand, within PfGW456L13_716at 813.122 kb on - strand, within PfGW456L13_716at 813.273 kb on + strand, within PfGW456L13_716at 813.274 kb on - strand, within PfGW456L13_716at 813.312 kb on + strandat 813.313 kb on - strandat 813.313 kb on - strandat 813.313 kb on - strandat 813.313 kb on - strandat 813.313 kb on - strandat 813.313 kb on - strandat 813.314 kb on + strandat 813.314 kb on + strandat 813.314 kb on + strandat 813.314 kb on + strandat 813.314 kb on + strandat 813.315 kb on - strandat 813.315 kb on - strandat 813.315 kb on - strandat 813.315 kb on - strandat 813.315 kb on - strandat 813.354 kb on + strandat 813.354 kb on + strandat 813.354 kb on + strandat 813.354 kb on + strandat 813.354 kb on + strandat 813.354 kb on + strandat 813.354 kb on + strandat 813.354 kb on + strandat 813.355 kb on - strandat 813.355 kb on - strandat 813.355 kb on - strandat 813.355 kb on - strandat 813.355 kb on - strandat 813.355 kb on - strandat 813.355 kb on - strandat 813.365 kb on + strandat 813.365 kb on + strandat 813.366 kb on - strandat 813.366 kb on - strandat 813.366 kb on - strandat 813.366 kb on - strandat 813.366 kb on - strandat 813.366 kb on - strandat 813.400 kb on + strand, within PfGW456L13_717at 813.401 kb on - strand, within PfGW456L13_717at 813.408 kb on + strand, within PfGW456L13_717at 813.460 kb on + strandat 813.460 kb on + strandat 813.460 kb on + strandat 813.461 kb on - strandat 813.495 kb on + strandat 813.496 kb on - strandat 813.597 kb on - strand, within PfGW456L13_718at 813.597 kb on - strand, within PfGW456L13_718at 813.637 kb on - strand, within PfGW456L13_718at 813.637 kb on - strand, within PfGW456L13_718at 813.637 kb on - strand, within PfGW456L13_718at 813.782 kb on + strand, within PfGW456L13_718at 813.782 kb on + strand, within PfGW456L13_718at 813.783 kb on - strand, within PfGW456L13_718at 813.783 kb on - strand, within PfGW456L13_718at 813.783 kb on - strand, within PfGW456L13_718at 813.783 kb on - strand, within PfGW456L13_718at 814.244 kb on + strandat 814.244 kb on + strandat 814.244 kb on + strandat 814.244 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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811,955 - +0.5
812,117 - PfGW456L13_715 0.18 +0.7
812,398 - PfGW456L13_715 0.47 +0.2
812,398 - PfGW456L13_715 0.47 +1.1
812,398 - PfGW456L13_715 0.47 -0.6
812,400 + PfGW456L13_715 0.47 -0.5
812,400 + PfGW456L13_715 0.47 -0.3
812,400 + PfGW456L13_715 0.47 +0.2
812,401 - PfGW456L13_715 0.47 +0.4
812,401 - PfGW456L13_715 0.47 +1.6
812,401 - PfGW456L13_715 0.47 -1.3
812,499 + PfGW456L13_715 0.57 +0.3
812,499 + PfGW456L13_715 0.57 +0.3
812,551 + PfGW456L13_715 0.63 +0.3
812,551 + PfGW456L13_715 0.63 -0.1
812,551 + PfGW456L13_715 0.63 +1.0
812,650 + PfGW456L13_715 0.73 +0.6
813,119 + PfGW456L13_716 0.48 +1.2
813,119 + PfGW456L13_716 0.48 +0.8
813,120 - PfGW456L13_716 0.49 +0.5
813,121 + PfGW456L13_716 0.49 +0.6
813,121 + PfGW456L13_716 0.49 +0.7
813,121 + PfGW456L13_716 0.49 +0.5
813,122 - PfGW456L13_716 0.49 -0.3
813,122 - PfGW456L13_716 0.49 -0.5
813,273 + PfGW456L13_716 0.86 -0.4
813,274 - PfGW456L13_716 0.86 -1.1
813,312 + +0.7
813,313 - -1.4
813,313 - -0.9
813,313 - -1.2
813,313 - -0.9
813,313 - +0.5
813,313 - +0.6
813,314 + +0.0
813,314 + -0.8
813,314 + -0.4
813,314 + +0.3
813,314 + +0.4
813,315 - -0.2
813,315 - -0.2
813,315 - -0.1
813,315 - +1.2
813,315 - +0.3
813,354 + -0.4
813,354 + -0.5
813,354 + -1.1
813,354 + -0.2
813,354 + +0.7
813,354 + +0.6
813,354 + -0.5
813,354 + +1.2
813,355 - +0.1
813,355 - +0.0
813,355 - +0.6
813,355 - +0.5
813,355 - +0.0
813,355 - +1.6
813,355 - -2.0
813,365 + +0.7
813,365 + -0.4
813,366 - -0.5
813,366 - -0.7
813,366 - +0.3
813,366 - -0.8
813,366 - +1.6
813,366 - +0.8
813,400 + PfGW456L13_717 0.31 -0.4
813,401 - PfGW456L13_717 0.32 -1.7
813,408 + PfGW456L13_717 0.37 -0.2
813,460 + +1.6
813,460 + -0.7
813,460 + +0.8
813,461 - -0.7
813,495 + -0.0
813,496 - -0.2
813,597 - PfGW456L13_718 0.17 +0.2
813,597 - PfGW456L13_718 0.17 +0.4
813,637 - PfGW456L13_718 0.21 -0.1
813,637 - PfGW456L13_718 0.21 +0.0
813,637 - PfGW456L13_718 0.21 -0.1
813,782 + PfGW456L13_718 0.38 -0.0
813,782 + PfGW456L13_718 0.38 +0.4
813,783 - PfGW456L13_718 0.38 +0.9
813,783 - PfGW456L13_718 0.38 +0.2
813,783 - PfGW456L13_718 0.38 +0.7
813,783 - PfGW456L13_718 0.38 +1.1
814,244 + +1.2
814,244 + +1.1
814,244 + -1.5
814,244 + +0.6

Or see this region's nucleotide sequence