Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_347 and PfGW456L13_348 are separated by 556 nucleotides PfGW456L13_348 and PfGW456L13_349 overlap by 2 nucleotides PfGW456L13_349 and PfGW456L13_350 are separated by 116 nucleotides PfGW456L13_350 and PfGW456L13_351 are separated by 56 nucleotides PfGW456L13_351 and PfGW456L13_352 are separated by 1 nucleotides
PfGW456L13_347 - Nitrogen regulation protein NR(I), at 408,059 to 409,495
_347
PfGW456L13_348 - FIG00955429: hypothetical protein, at 410,052 to 410,492
_348
PfGW456L13_349 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 410,491 to 410,946
_349
PfGW456L13_350 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 411,063 to 411,548
_350
PfGW456L13_351 - Glutaredoxin 3 (Grx3), at 411,605 to 411,859
_351
PfGW456L13_352 - FIG136845: Rhodanese-related sulfurtransferase, at 411,861 to 412,274
_352
Position (kb) 410
411 Strain fitness (log2 ratio) -2
-1
0
1
2 at 409.494 kb on - strand at 409.504 kb on + strand at 409.504 kb on + strand at 409.504 kb on + strand at 409.505 kb on - strand at 409.505 kb on - strand at 409.507 kb on + strand at 409.507 kb on + strand at 409.507 kb on + strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.628 kb on + strand at 409.715 kb on + strand at 409.716 kb on - strand at 409.793 kb on + strand at 409.793 kb on + strand at 409.794 kb on - strand at 409.795 kb on + strand at 409.817 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.948 kb on - strand at 409.973 kb on + strand at 409.973 kb on + strand at 409.973 kb on + strand at 409.973 kb on + strand at 409.974 kb on - strand at 410.027 kb on - strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.427 kb on + strand, within PfGW456L13_348 at 410.427 kb on + strand, within PfGW456L13_348 at 410.428 kb on - strand, within PfGW456L13_348 at 410.428 kb on - strand, within PfGW456L13_348 at 410.428 kb on - strand, within PfGW456L13_348 at 410.456 kb on + strand at 410.456 kb on + strand at 410.457 kb on - strand at 410.641 kb on + strand, within PfGW456L13_349 at 410.642 kb on - strand, within PfGW456L13_349 at 410.650 kb on + strand, within PfGW456L13_349 at 410.650 kb on + strand, within PfGW456L13_349 at 410.650 kb on + strand, within PfGW456L13_349 at 410.650 kb on + strand, within PfGW456L13_349 at 410.650 kb on + strand, within PfGW456L13_349 at 410.650 kb on + strand, within PfGW456L13_349 at 410.651 kb on - strand, within PfGW456L13_349 at 410.651 kb on - strand, within PfGW456L13_349 at 410.896 kb on - strand, within PfGW456L13_349 at 410.915 kb on - strand at 410.940 kb on - strand at 410.944 kb on + strand at 410.944 kb on + strand at 410.945 kb on - strand at 410.945 kb on - strand at 410.945 kb on - strand at 411.050 kb on + strand at 411.050 kb on + strand at 411.050 kb on + strand at 411.050 kb on + strand at 411.050 kb on + strand at 411.051 kb on - strand at 411.051 kb on - strand at 411.051 kb on - strand at 411.051 kb on - strand at 411.056 kb on + strand at 411.057 kb on - strand at 411.064 kb on + strand at 411.118 kb on + strand, within PfGW456L13_350 at 411.119 kb on - strand, within PfGW456L13_350 at 411.119 kb on - strand, within PfGW456L13_350 at 411.202 kb on + strand, within PfGW456L13_350 at 411.202 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.578 kb on + strand at 411.578 kb on + strand at 411.579 kb on - strand at 411.579 kb on - strand at 411.598 kb on - strand at 411.801 kb on + strand, within PfGW456L13_351 at 411.801 kb on + strand, within PfGW456L13_351 at 411.801 kb on + strand, within PfGW456L13_351 at 411.801 kb on + strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.820 kb on - strand, within PfGW456L13_351 at 411.840 kb on + strand at 411.840 kb on + strand at 411.840 kb on + strand at 411.841 kb on - strand at 411.859 kb on + strand at 411.859 kb on + strand at 411.859 kb on + strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 409,494 - -1.0 409,504 + -0.6 409,504 + -1.3 409,504 + +0.5 409,505 - +0.4 409,505 - -1.6 409,507 + -1.8 409,507 + -0.4 409,507 + -0.9 409,508 - +1.1 409,508 - +0.4 409,508 - -0.0 409,508 - +0.1 409,508 - -0.1 409,550 + +0.9 409,550 + -0.0 409,550 + -0.6 409,550 + +0.5 409,550 + -0.7 409,550 + -0.3 409,551 - +0.0 409,551 - -1.4 409,551 - +1.3 409,551 - +0.7 409,551 - +0.1 409,628 + +2.1 409,715 + -1.6 409,716 - -0.5 409,793 + +0.5 409,793 + +0.6 409,794 - +0.4 409,795 + -0.4 409,817 + -0.4 409,893 + -0.0 409,893 + +0.5 409,893 + -0.0 409,893 + +0.2 409,893 + +0.6 409,893 + -0.9 409,893 + -0.0 409,894 - +0.1 409,894 - +0.5 409,894 - +0.3 409,894 - -0.5 409,894 - -0.4 409,894 - +0.2 409,894 - -0.9 409,894 - -2.0 409,894 - +0.2 409,894 - -1.3 409,948 - +0.1 409,973 + +0.4 409,973 + -0.8 409,973 + +0.3 409,973 + -0.4 409,974 - +0.5 410,027 - +0.3 410,053 + +1.4 410,053 + -0.1 410,053 + -1.5 410,053 + -0.7 410,053 + +0.5 410,053 + -0.7 410,054 - -1.0 410,054 - -0.8 410,054 - +0.1 410,054 - -0.3 410,054 - +0.0 410,054 - +0.3 410,427 + PfGW456L13_348 0.85 +0.7 410,427 + PfGW456L13_348 0.85 +1.1 410,428 - PfGW456L13_348 0.85 +0.2 410,428 - PfGW456L13_348 0.85 -0.5 410,428 - PfGW456L13_348 0.85 +0.2 410,456 + -1.1 410,456 + +1.1 410,457 - -0.5 410,641 + PfGW456L13_349 0.33 -0.7 410,642 - PfGW456L13_349 0.33 +0.3 410,650 + PfGW456L13_349 0.35 +0.8 410,650 + PfGW456L13_349 0.35 +0.5 410,650 + PfGW456L13_349 0.35 -0.4 410,650 + PfGW456L13_349 0.35 +0.7 410,650 + PfGW456L13_349 0.35 -0.3 410,650 + PfGW456L13_349 0.35 +0.2 410,651 - PfGW456L13_349 0.35 -0.7 410,651 - PfGW456L13_349 0.35 -0.6 410,896 - PfGW456L13_349 0.89 -1.8 410,915 - +0.2 410,940 - +1.1 410,944 + -0.3 410,944 + +0.4 410,945 - -0.7 410,945 - -0.1 410,945 - +0.3 411,050 + +0.3 411,050 + +0.1 411,050 + -1.1 411,050 + -1.7 411,050 + +1.0 411,051 - +0.4 411,051 - +1.0 411,051 - +0.1 411,051 - -0.5 411,056 + +1.4 411,057 - +0.0 411,064 + +0.4 411,118 + PfGW456L13_350 0.11 +0.1 411,119 - PfGW456L13_350 0.12 -0.0 411,119 - PfGW456L13_350 0.12 -0.4 411,202 + PfGW456L13_350 0.29 +0.7 411,202 + PfGW456L13_350 0.29 -0.1 411,478 + PfGW456L13_350 0.85 +0.1 411,478 + PfGW456L13_350 0.85 -0.9 411,478 + PfGW456L13_350 0.85 +2.1 411,478 + PfGW456L13_350 0.85 -0.2 411,478 + PfGW456L13_350 0.85 +0.3 411,478 + PfGW456L13_350 0.85 +2.1 411,479 - PfGW456L13_350 0.86 -1.8 411,479 - PfGW456L13_350 0.86 +0.1 411,479 - PfGW456L13_350 0.86 +1.1 411,479 - PfGW456L13_350 0.86 -1.3 411,479 - PfGW456L13_350 0.86 -0.9 411,479 - PfGW456L13_350 0.86 -0.6 411,479 - PfGW456L13_350 0.86 +0.7 411,578 + -0.7 411,578 + +0.4 411,579 - +0.8 411,579 - -0.5 411,598 - +0.3 411,801 + PfGW456L13_351 0.77 +0.6 411,801 + PfGW456L13_351 0.77 -1.4 411,801 + PfGW456L13_351 0.77 -0.8 411,801 + PfGW456L13_351 0.77 -0.3 411,802 - PfGW456L13_351 0.77 -1.7 411,802 - PfGW456L13_351 0.77 +1.1 411,802 - PfGW456L13_351 0.77 +0.8 411,802 - PfGW456L13_351 0.77 +0.6 411,820 - PfGW456L13_351 0.84 +1.0 411,840 + +0.0 411,840 + -1.0 411,840 + -0.8 411,841 - +0.1 411,859 + +1.9 411,859 + -1.3 411,859 + +1.1 411,860 - -1.4 411,860 - +0.3 411,860 - -0.3 411,860 - -0.6 411,860 - -1.6 411,902 + -0.7
Or see this region's nucleotide sequence